| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1960 |
|---|
| Symbol | |
|---|
| ID | 4073220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 2353476 |
|---|
| End bp | 2354432 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637983972 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_591035 |
|---|
| Protein GI | 94968987 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.82922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGACG GGAGCATTCC GAGCACTCTG ACTGAACTAG GCAAAATTGA CGCGTTTGTG
AACAGCCCCA CGTTCTTTCA ACGTCTGTTG GAAGAGCTCT ACGAGGGCGT TTATTTCGTG
GACACCCACC GCCGCATCCT CTACTGGAAC CGCGCTGCGC ATCGCATCTC CGGCTACAGC
GCCGAGGAAG TCATCGGCCA CTACTGCCAG GACAACATCC TCAACCACGT GGACGACGCC
GGCACTCAAC TCTGTTTCGG CAAGTGTCCG CTGTTGACGA CGATCGAGCA CGGCGTCCCG
CACGAGTGCG AAATCTATCT CCACCACAAG AATGGCCACC GCGTCCCGGT CCGCGTGCAC
GTCACGCCTG TTCGCGATGC CAACAACCAG ATCATCGGCG CAGTCGAGAT GTTCGTCGAA
GCCAACAGCT CAAAAGCCCG CAACCAGCGC GCCGAGCTAC TCCATAGCCG TGGCTTCCTC
GATCCTCTGA CCGACATCGG CAATCGCCGC TATCTCGAAA TCGAACTCTT CAAAGCACTC
CAGGAATTCC GCCAGCACGG TCTTCCCTTC GGCGCCATCC TTGCCGACAT CGATCACCTA
CGGATTGTGA ACGAGCACTA TGGCCACACG GTCGGCGATC AAGTCCTGCG CGCGGTTTCG
TTGACGCTGG CAAATGCCGT CAGCGAAGCC GATATCCTCG GACGCTGGTC GGTGGATGAG
TTCCTCATCC TCGTGCCCAG TTCTTCCGTT GACAGCCTTG GCGACATCGC CGAACGCTGC
CGCGCCCTCG TGGAACGCGC CAACATCCAG GTCGGCACCG AACAGTTGGT CGCGACCATC
TCCGCCGGCG CCTCAGCCGT GGACCCATTG GACACCATGG AGATGTTCAT CCGCCGGCTA
GAGAATTACC TGCAGCGCAG CAAGTACTCA GGCCGCAATC GAATCACGAT GAAGTAA
|
|---|
| Protein sequence | MADGSIPSTL TELGKIDAFV NSPTFFQRLL EELYEGVYFV DTHRRILYWN RAAHRISGYS
AEEVIGHYCQ DNILNHVDDA GTQLCFGKCP LLTTIEHGVP HECEIYLHHK NGHRVPVRVH
VTPVRDANNQ IIGAVEMFVE ANSSKARNQR AELLHSRGFL DPLTDIGNRR YLEIELFKAL
QEFRQHGLPF GAILADIDHL RIVNEHYGHT VGDQVLRAVS LTLANAVSEA DILGRWSVDE
FLILVPSSSV DSLGDIAERC RALVERANIQ VGTEQLVATI SAGASAVDPL DTMEMFIRRL
ENYLQRSKYS GRNRITMK
|
|---|
| |