| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1662 |
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| Symbol | |
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| ID | 4069810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 2008874 |
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| End bp | 2010607 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637983670 |
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| Product | sigma-54, RpoN |
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| Protein accession | YP_590737 |
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| Protein GI | 94968689 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.125129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCTTC TCCAGCCTAG ACTGAATCTC AAAGTGTCTC AGAAACAGAT CCTCACCCCG
GGTCTGGTTC AGATGGTCAG CGTCCTTGCG CTCAATAAAA TGGAGCTCAA GGAGATGATC
AATGAGGAGA TGATTGAAAA CCCGGTCCTC GAAGAACTCG ACGAAAATGT ACCCCTCATA
GACGACATCT CCGCCAAGGA AGAACAACGC GACCGCGATT CTTCCCTGGC CACCGCTGAA
GAAGCCCCCG CCACTCCTGA AGCCAAGGAC CCATTTGAAG AAATCGACTT CGGCTCCTTC
TTCCAGGAAT ACCTCGATCC GGGTTACCGC AGTTCGAGCG AAATCGAAGA CGTAGAACGT
CCTTCCTTCG AAAACTTCCT CTCCAAGCCA ACCACCCTCA CCGACCACCT CATGTGGCAG
CTTGGCTCCA TGCATTTGAA GGACGACGTT CTCGCCGCTG CCGAACTCAT CATCGGCAAC
CTCAACGATG AGGGCTATCT CACCGCCAGC GAAGACGAAC TCCTCGGCAT CTCCACCGAA
GAAGCCGGTG CCGAACCTTC CAGCGAGAGT GCGAAAGCCG TCTCCACTGA TGTTGACCAG
CAGATTTCCG CCCTCGAGAT GGCGGGCTTC GAAGCTGGAG AAAATATCGA AGTCACTGAA
GAGTCGGATT CCCATTCCGA GATCGACGGC GGCAACACTG CCGTTCAGGT TGAAACCGCC
GTCGAACCGC CGCGGCCTAC TCTGGTCCCC CCGCGTACCG CGCCAGCCGC CGTTCCGTTC
TGTCGCGACG CCCTTCGTGA AGCGATCCAT ATCATCCAGA ATCTCGATCC CGTTGGGGTT
GCGACGCAAG ACCTCCGCGA GTGCCTGCTG ATCCAGCTTC GCTACTTCGA AGGCCTGCCC
CACAAGAACG GCAACGGCCA CATCGCGCAA GCAATTGACG ACGGCATACG CATGGTCAGC
GATCACATGC ACGAACTCCA GAACAAGCAG TACAAGGAGA TCTCGAAAGC ACTCGGCCGT
CCCATCGAAT CGATCACTGC AGCGTTAGAT TTCATCCGCA CCCTCGACCC CAAGCCCGGC
CTCCGCTACA ACAAGCAGGA GACGCGTCTC ATCGAGCCCG ATGTCGCCTT CGTCAAACAA
GGTGACGAAT ACATCGTCGT CATGAACGAC GAAGAAATCC CGCAGCTCCG CGTCAATCCC
GGCTACAAGC GCCTCCTCAA TCGCGACGCC GCCGAGAAAG ACGTTCGCAA CTACGTCAAA
GAGCGCTACA AGTCAGCCAT CCAGCTCATC AAGAACATCG AGCAGCGTAA ACAAACGATC
CTCAAAGTCT GCTACTCGAT CATCAATCGC CAGCGCGACT TCCTCGACCA CGGCATTGAC
CAGCTCAAGC CGATGATGAT CAAAGAAGTC GCCGAAGAAA TTGGCGTGCA TCCTTCAACC
GTCAGCCGAG CCGTCGCCAA CAAATACGTT CACACCTCGC AAGGTGTCTA CGAACTCCGC
TACTTCTTCA GTGAAAGCGT GAATGGTCCG GAAGGCGGTG CGACATCACT GCTCATCCTC
AAGCGCCGCG TAAAGAAGCT AATCGAAGAA GAAGACCCGG CCCGCCCGCT AACCGACGAG
CAAATCACCC GCATCCTGCA ATCCCAGGGA ATTCAAGTCA CGCGCCGCAC CGTCGCCAAA
TACCGCGAAG ACATGCGAAT TCCCAGCACC CACCAGCGCC GCGTCAAAAG CTAG
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| Protein sequence | MVLLQPRLNL KVSQKQILTP GLVQMVSVLA LNKMELKEMI NEEMIENPVL EELDENVPLI
DDISAKEEQR DRDSSLATAE EAPATPEAKD PFEEIDFGSF FQEYLDPGYR SSSEIEDVER
PSFENFLSKP TTLTDHLMWQ LGSMHLKDDV LAAAELIIGN LNDEGYLTAS EDELLGISTE
EAGAEPSSES AKAVSTDVDQ QISALEMAGF EAGENIEVTE ESDSHSEIDG GNTAVQVETA
VEPPRPTLVP PRTAPAAVPF CRDALREAIH IIQNLDPVGV ATQDLRECLL IQLRYFEGLP
HKNGNGHIAQ AIDDGIRMVS DHMHELQNKQ YKEISKALGR PIESITAALD FIRTLDPKPG
LRYNKQETRL IEPDVAFVKQ GDEYIVVMND EEIPQLRVNP GYKRLLNRDA AEKDVRNYVK
ERYKSAIQLI KNIEQRKQTI LKVCYSIINR QRDFLDHGID QLKPMMIKEV AEEIGVHPST
VSRAVANKYV HTSQGVYELR YFFSESVNGP EGGATSLLIL KRRVKKLIEE EDPARPLTDE
QITRILQSQG IQVTRRTVAK YREDMRIPST HQRRVKS
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