| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1538 |
|---|
| Symbol | |
|---|
| ID | 4072929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1878137 |
|---|
| End bp | 1881835 |
|---|
| Gene Length | 3699 bp |
|---|
| Protein Length | 1232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637983547 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_590614 |
|---|
| Protein GI | 94968566 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000318851 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.580638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCGTT TCTGGAACCG ATGTTTCGTT GCGCTGTTCA TCATTGCGGT GCTCGCCGCA
TCGGCAATTG CGCAAAGCAC TGGCGGCCGT ATCCTCGGCA AGATTTCAGA TCCCAGCGGC
GCAGTCATAC CCGGCGCCAC CGTGACGCTC ACCAACGAAG CGACCGGCGT GGCGAATACC
ACGGAGTCCG ATAAGGACGG CAATTACGGC TTCCCGAGCG TGCCGGTGGG CGATTACGGC
ATTGAATATA CGGCCACAGG TTTCAAGCAG AACGTGCTGC ACCACGTCAC GGTGATTTTG
AACCAGGCGA TGACCCTGAA CCAGACGATG CAGTTAGGCC AGAAGCAGGA AGTGGTCGAC
GTCAGTTCGG AAGCACCTAT CGTTGATACG ACTTCGACGC AGTTGGGTGC AGTGATGGGA
TCGCGCTCGG TGGAGCAGCT TCCGCTGAAC TCTCGCGATA CCTATCAACT TCTGCAGTTG
CAGCCGGGCG TAATGTCGAA CGTTGGCGGC AGCAACACGG TGGCGTACGG ATCGGATAAG
CCGGGTGTGG TCTCCGTGAA CGGCGGCCGC GGCCGTTCGA ACAATTTCAA TGTGAATGGC
GGCGACGCAA ACGACTTGTT CGCGAACCTT CCGACCATCC AGCCGAATCC TGACAGCATT
GAAGAATTCC GCGTTATCAC TAACACTTTC GACGCTGAAT ATGGCCGCAA CTCCGGCGCC
GTGATCAACG TGGTGACCAA GTCGGGCACC AATAATTGGC ATGGAAGCGC CTACGAATTC
TTTCGAAATG CAGTCCTGAA TGCGCAGGGC TACTTCAATA CTTTTAAGCC CGCTTTCCAG
CAGAACCAGT TTGGTGGAAC GTTGGGCGGA CCGATCGTTA AAGACCGGAC GTTCTTCTTC
GTCTCGTACG AAGGGCGTCG AGTGAAACAA GGCACGCCGA CGGACCTGAG CTTCATGCCG
GATTCGGCAA TGCGCAATGG TGACTTCAGC TCCCTGCTCG ACCCTGTAAA CATGCCGCAA
TTCACAGGCA ATGTGAACTC CGCGGAAGAT GGAAGTTCGC TGATGGCGGA CACGCTGAAC
TCTCGTTGCG GCCCGTATCT TGCGAACGGA CCGGTCGTCG GAGGAGAGGC TTGGGCCGAT
GTGTTCCCAG GTGGAATGGT GCCGTCGCAG TGTCTCGATC CAACCGCCTC GGCGCTCACC
AAGCTCTACG TCCCGCTGCC TAACCAGCCG GGCGGCTACT ACCAGAGCGC GCCTCCGCAA
ATCATCAACG GTAATGAAGG TTCTATAAAG ATAGATCATC GCCTCACGAA CAACCAGAAC
CTGAACTTCT ACTGGTACAT GGACGATTCC ACCACGCAAC AGGCGTTGTC GTTCTTCCAG
GCGGCAGGCG CGAACGTGCC CGGATTTGGC GCGCAGATTC CGACGCGTGT GCAGCAATAC
AACCTGTCGC ATACGTGGAC GATTAGCAAC ACGGTGGTGA ACGAAGCGCG CTTCACCTAC
ATGCGTGAAG GCCAGCGAGG ATTCGAGAAG CCCGCACGGA CTGACATTGT GCAGAATTCG
TGCCAGGGGC TGGTTGATCC GACAATGTGC TTCAGCGACC CGACGAATCC GAAGCTCGGA
ATCACGCCGA ACCTCGGTGC GAGCGTCGAA GGTGTTCCAT TCATCTCGGT ATCCGGCGCG
TTCAACATCG GCAACAATTT CGAAGGCCAA TTGCCACAGG TGGGCAATAG CTTTGCGTGG
TCCGATAACT TGAGCAAGGT GTGGGGCAAT CACACGCTGA AGTTTGGTGG CGATGTTCGC
CGCATGCGCT TCGACCAGAC GCTGTACTAC AACGTCAACG GCTACTACTC GTACTATTCC
GATTCGACGA CCACCGGCTT ACCGTTGGCG GACTGGTTCC TCGGATTGCC GGCGAGCTAT
TCGCAGGGTT CAGCGCAGCG CGAAAACGTC CGCAGCACAT CTCTGTATCT GTTCGCGCAA
GACAGCTGGA AGATCAAACC GAACATCACG TTGAACTATG GATTGCGCTG GGAGTTGAAT
ACACCGCTTG CTGACCAACT TGGCCACGTG CAAACGTACC GCCCCGGGCA GGTTACGGAC
AAGTATCCAT GCACCTGCGG ACCCAACGCT CCGGACAACG CCTTCTTCCC TGTCGGGTTG
GTATTCCCCG GAGATAAAGG TGTACCACCG GGTATGACGG ACACCTATTA CAAGGGATGG
GCGCCGCGCA TCGGTATCGC ATACAGTCCG AATGCCGATA GCGGGCTGAG CAAGGCCCTG
TTCGGAGGCC CCGGGAAGAC CAGTATCCGC GCAGGCTTTG GCTTGTTCTA CAACCCGATT
GAGCAGCTTG TGCTTGAGCA GTTCGGCGCC GAGCCTCCGT TCGGCGGTAG CAACTACATC
TACGATTCCA TGTTCAATAC GCCGTTCCAG GATACGGCGG GCAACCAGTA CCCGAACCCG
TTCAACGGGA TCCTGACGCC GAAGCCAGGG ACGTCGATCG ACTGGTCTTC GTTCCGTCCG
ATCCTTCTCT ACGGCGATAT GCAGCCGCAC ATCCGGACGC AGTACTCCGA GCAGTACAAC
CTGAATATCC AGCGCGAGTT CGGCAAAGAC ACCGTGCTGC AACTCGGTTA CGTTGGCTCA
CAGGCTCACC GCCTGCTGGT TACGCATGAC ATCAACTATG CGAATCCGCA AACGTGTCTC
GACCTAAACG CCACCATGGG TGACGGGACG TGCGCGCAGT ACTTTGGCGA CAGCTCCTTC
TACATCCCGG AAGGCACGGT CATCGCTCCG CAGGGCTTGA ACCTTCCCTA CAATCCGGAT
GGCTCAACCT TTATTCCTGG CGGTACCGTG GTTGGGCCGA ACGGCATCAC TCTCGTTGGT
CTTCGCCCCT ACTCTTCCCC CAATTGCCAT CCGATGACGG GCGTTGGTTG CCCGGCGGAC
CAAGTACCAG TCTTCTCGAG CATCTTTGCG CAGGACACGG TCGGCAATTC GAACTACAAC
TCGTTCCAGG CAATGCTGCA ACGGCGGTTC TCCGCTGGTC TGCAGTTCCA GCTGGCGTAC
ACCTACAGCA AATCTCTCGA TGAAGGCTCG AGCTTCGAAG GTATCGTCAA TCCGGTCGAC
ATTCATCGCA GCTATGCCGC TTCGCTCTTC GACGCGCGAC ATCGCTTTGT CGCCAGCTAC
GATTGGGAAC TGCCGATCCG CAAGTTCGAA GGCTTCGCAG GCAAAGCGCT CAACGGCTGG
GCGACCTCGG GCATCGTGAC GATCCAGAGC GGATTCCCGA TCCGCATAAC CGACCAGAAC
GACAACGAGT TGTATAGCAG CTTCGATTTC GAAACCGTTG GGCAACCGAA CCAGGTCGGA
AAATTCACCA CTTGGGATCC CCGGTCGCAC GGCGGCTACT ATTTCGATGG TACCGACGGC
CAAATCTTCA CGGATAACGT CGCCTTGGGA ACCGTCGGTA ACGCGAGCCG TACCATCTGC
TGTGGTCCCG GAATTGCCAA CTGGGACATG ACGTTCGTGA AGAACACGAA ATTCGGCGAG
CGTTGGGACA CGCAGTTCCG CGCTGAGTTC TTCAATATTC TCAACCACAC CCAGTTCTAT
AACCCCGATG GCAACATCAC GGATGGAAGC GACTTCGGAC GCATCAAGAG CACTCGCGAC
CCGCGCCTCA TCCAGTTTGC CTTCAAGATT CTCTTTTAG
|
|---|
| Protein sequence | MYRFWNRCFV ALFIIAVLAA SAIAQSTGGR ILGKISDPSG AVIPGATVTL TNEATGVANT
TESDKDGNYG FPSVPVGDYG IEYTATGFKQ NVLHHVTVIL NQAMTLNQTM QLGQKQEVVD
VSSEAPIVDT TSTQLGAVMG SRSVEQLPLN SRDTYQLLQL QPGVMSNVGG SNTVAYGSDK
PGVVSVNGGR GRSNNFNVNG GDANDLFANL PTIQPNPDSI EEFRVITNTF DAEYGRNSGA
VINVVTKSGT NNWHGSAYEF FRNAVLNAQG YFNTFKPAFQ QNQFGGTLGG PIVKDRTFFF
VSYEGRRVKQ GTPTDLSFMP DSAMRNGDFS SLLDPVNMPQ FTGNVNSAED GSSLMADTLN
SRCGPYLANG PVVGGEAWAD VFPGGMVPSQ CLDPTASALT KLYVPLPNQP GGYYQSAPPQ
IINGNEGSIK IDHRLTNNQN LNFYWYMDDS TTQQALSFFQ AAGANVPGFG AQIPTRVQQY
NLSHTWTISN TVVNEARFTY MREGQRGFEK PARTDIVQNS CQGLVDPTMC FSDPTNPKLG
ITPNLGASVE GVPFISVSGA FNIGNNFEGQ LPQVGNSFAW SDNLSKVWGN HTLKFGGDVR
RMRFDQTLYY NVNGYYSYYS DSTTTGLPLA DWFLGLPASY SQGSAQRENV RSTSLYLFAQ
DSWKIKPNIT LNYGLRWELN TPLADQLGHV QTYRPGQVTD KYPCTCGPNA PDNAFFPVGL
VFPGDKGVPP GMTDTYYKGW APRIGIAYSP NADSGLSKAL FGGPGKTSIR AGFGLFYNPI
EQLVLEQFGA EPPFGGSNYI YDSMFNTPFQ DTAGNQYPNP FNGILTPKPG TSIDWSSFRP
ILLYGDMQPH IRTQYSEQYN LNIQREFGKD TVLQLGYVGS QAHRLLVTHD INYANPQTCL
DLNATMGDGT CAQYFGDSSF YIPEGTVIAP QGLNLPYNPD GSTFIPGGTV VGPNGITLVG
LRPYSSPNCH PMTGVGCPAD QVPVFSSIFA QDTVGNSNYN SFQAMLQRRF SAGLQFQLAY
TYSKSLDEGS SFEGIVNPVD IHRSYAASLF DARHRFVASY DWELPIRKFE GFAGKALNGW
ATSGIVTIQS GFPIRITDQN DNELYSSFDF ETVGQPNQVG KFTTWDPRSH GGYYFDGTDG
QIFTDNVALG TVGNASRTIC CGPGIANWDM TFVKNTKFGE RWDTQFRAEF FNILNHTQFY
NPDGNITDGS DFGRIKSTRD PRLIQFAFKI LF
|
|---|
| |