| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0903 |
|---|
| Symbol | |
|---|
| ID | 4069114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1131222 |
|---|
| End bp | 1132379 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637982910 |
|---|
| Product | xylose isomerase |
|---|
| Protein accession | YP_589980 |
|---|
| Protein GI | 94967932 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2115] Xylose isomerase |
|---|
| TIGRFAM ID | [TIGR02631] xylose isomerase, Arthrobacter type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.122683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATG CTTACCAGCC GCGACCGGAA CACAAGTTCT CGTTCGGCCT TTGGACGATC
GCGAACCGCG GCCGCGATCC TTTCGGCGAT GCAGTGCGCC CCACTATCCC TCCGAACGAC
ATTGTCGCTT TGCTCCGCGA GGTAGGCGCA TGGGGGGTCA ATCTTCACGA TAACGATCTT
GTTCCAATTG ACGCGACGCC ATCCGAGCGC GACAAGATCG TCCGCGATTT TCAGGCGGCC
TGCAGGCAGC ACGGCATCGT CGTGCCGATG GCGACGGTCA ACTTGTTCTT CGATCCAATC
TTCAAAGATG GAGCTTTCAC CGCAAACGAC GCCGATGTGC GTGCGTACGC TCTTCAGAAG
ACGATGCGCG CTATGGATCT CGGCGCCGAG TTAGGCGCTA AGCTCTTTGT GCTCTGGGGT
GGGCGCGAAG GAACTGAGAC TGATGCGTGC CGCCGTCCCG AAGAACCCTT CAAGCGGTTG
CGCGAAGCCA TCGATTATTT GTGCGAATAC AATCTCGACA AAAAGTATGG TTTCAAATTT
GCGTTGGAGG CCAAGCCAAA CGAACCTCGC GGCGACATAT ACATGCCGAC GACTGGTGCC
TATCTCGGTT TCATCCCAAC CCTTGCGCAT CCGGAGATGG TTGGTGTAAA TCCTGAGGTC
GCGCACGAGC ACATGGCGGG ATTGAACGCG CTTCACGCGG TTGCGCAAGC ATGGGAAGCG
GGCAAACTCT TCCACATCGA TCTAAACGAT CAGAACCCTG GGCGCTATGA CCAGGATTTT
CGTTTTGCAT CTGCAACCCC AAAATCAATG TTCTGGTTGG TGAAGTTCCT TGAAGACTCG
GGGTATCAAG GGCCGCGCCA CTTTGACGCG CACGCTTACA GGACAGAAGA CATCGCCGGC
GTAAAGGATT TTGCGCGCGG ATGCATGCGA AGCTACCTGA TCCTGAAGGA AAAGGCGCAG
CGCTGGAATG CCGACAAGGA GATCCAGCAA ATCTTCTCCG AGATCAACCC GCAAACCACC
GGCAGCTCGA AATATTCACA CGATGGCGCT CTGTCTCTTC TCAACCGCAC CTATGATCGC
GCAGCCATTG CGAAGCGCGG CCTGCAATAC GAGCGCCTCG ATCAGCTGAC TATGGAACTG
TTGTGGGGAA TACGGTAA
|
|---|
| Protein sequence | MSDAYQPRPE HKFSFGLWTI ANRGRDPFGD AVRPTIPPND IVALLREVGA WGVNLHDNDL
VPIDATPSER DKIVRDFQAA CRQHGIVVPM ATVNLFFDPI FKDGAFTAND ADVRAYALQK
TMRAMDLGAE LGAKLFVLWG GREGTETDAC RRPEEPFKRL REAIDYLCEY NLDKKYGFKF
ALEAKPNEPR GDIYMPTTGA YLGFIPTLAH PEMVGVNPEV AHEHMAGLNA LHAVAQAWEA
GKLFHIDLND QNPGRYDQDF RFASATPKSM FWLVKFLEDS GYQGPRHFDA HAYRTEDIAG
VKDFARGCMR SYLILKEKAQ RWNADKEIQQ IFSEINPQTT GSSKYSHDGA LSLLNRTYDR
AAIAKRGLQY ERLDQLTMEL LWGIR
|
|---|
| |