| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0185 |
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| Symbol | |
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| ID | 4073072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 195158 |
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| End bp | 198535 |
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| Gene Length | 3378 bp |
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| Protein Length | 1125 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637982185 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_589264 |
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| Protein GI | 94967216 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.161564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCCC TATTGGCAGG CACCGTCTTT GTTCCAGGGC TCGTCGCCCT CGCGTTCCTG
CTCGTCTTCG CGTATCTCCA GCGCCAATCC TCCGAACGGT ATTTCCATAG CTGGCAGTGG
TTCTGGTTCG CCAACACCGC TTACTACGCA CTCGTTGCGG TGGCCGACAC TCACCCCAAG
ATTCCAGCCT ATGCCTCGTT GGCTCACACC GCTGAAATCT GTGGAGCGGT CGCGCTCTTT
GTTTCCGCTC GATCCTTCGC GAAGACCGAA CCTCCTGCGT GGACCAAGTA CCTCGTTCTT
TGCGCCCTCA TTTATTGGAC AGCCCTCCAC GCCATCCCGC CACTAAGGGT CATGGTTCGG
CCGTACCTGC ACGCGTGGAT CGCTGTTCTC GTCGTGCTGT TACTCGCCAC CATGGAGTAC
GCGCGCGTTG CCTATCAGCG CGACTCCGCC GGCCTTCGCT GGATGACTGC ATCCACCGCC
CTTTGGATTG TTATGCAGGC CGGCAAGGAA ATTCCGCCGT CCTTGCTCGT CGGACGCTAT
CTCCATCGCG GATCCGAGTA CCTCGAAATC ATGCCGTTGC TCCTGCTCGG TACGGCGATG
GTGGTTGTGC TCTTTGACGA CGAACGTCGC GCCATCCAGG AAAACGCGCT GGCATTTTCT
TCGCTCGATA TCGATCCCAC CACGCCGGTC ACGCGCGAAC AGATTCAACC CAGCATCGAA
AGCCTCCTCA CCCGGTTCAT GAGTCTCCTG CGTCTCGAGC AGGCGGTGCT CTACGTCTCC
GAGCCTTGGC GCGGCAGTGT GCCTTCGGTC GCCCGCGGTT TCTCGCCGGA TTTCATCACC
CGGCTCGAGG TCCAGAACGC CGGCGACTAT CTCGCCGACA TCGCTTTCCG CCGTGGCGGC
ATCCTGAGCA TTCACTCGCT CAAGGAACTG CAAGGGCCCA TGCGTTCCGC TGCCCACCCC
GGATTGACCT CGTTGGTCAA CACACTGAAG GAAGAAAACA TCTCGCGGTT CAGTGCCGTC
TGTCTTCAGA CGCGCGAGCG CAACATGGGT GTCGTCATCT TCCCCCACGG CAAGCGCCAT
GCCTTCAGTG CCAGCCGCCT GCGTCTTCTT TTATCGGTCA GCATGCAGAT GGGCATGACG
CTCGAGAACT ACCTGCTGGT TCACGACGCT CATAGGCGAA CCAAAGAATT CGAACTGCTC
ACGCAGATCG GTCAGGTCAT CAGTTCGCGC CTCGATCCCG ACGAAGTTCT CGCCGCCGTG
CATCGCGAAC TCGGACGTCT GTTCGACACC AGCAACTTCT ACGTGGCCTT CCTGGAAGGC
TTGGAGCTTC GCTACGAGTT CGAAACCGTC GGCGCTATTC GTCAGCCCCG GCGTTCACGG
AGGTCGAAGA ACGGTCTCAG CGATTTCGTC ATCCGTACCG GCCAGCCAAT CCTGATTCGC
TCGGACATGA AGCGCGTCAG CCAGCGTCTC GGCATCGAGC CCAGCTCGCA TCCGGCGAAG
TGCTTCATCG GCGTGCCCAT CCGCATTGGC GCCGTCAGTG TCGGCGTTGT TGCCGCGCTG
AACTTCGATC GCGAATTTGT TTATGAGCAG CGCGACGTCG AAGTCCTCGC CACCGCTGCC
GGACAGGTCG CTGTTGCGAT TGAGAACGCG CGCATGTTCG CGCACGAACA ACGTCGCGCT
CGCTATCTCT CGTTCTTGAA CAACGTTTCG CAGACGGCCA TCTCCAGCCA GAACGCCGAG
GAGATGCTCA GCGAAATCGT TGGCCAGATC CAGAAGAACT TTAATTACGA CCACATCGGC
ATCGGAATTC TCGACTACGC CACCAAGGAA ATCGAAATCA AAGCCGAAGC CGGCACCACA
GCGCATGCGA AGGGCAAGCG CGTCGCGCTC GGCGTCGGTG TGCTCGGTCG CGTTGCACGC
ACCGGCGACA CTTCCCTGGT TCAAGATACT GCCGCCACGC ATCTCGCAGG CATTCTGCCC
GATTCGCGTT CTGCTCTCTG TATCCCCATC ACCTACGCCG AGCAGTTGCT CGGCGTGCTC
AACATCGAGA GCCGCCGCGA AAACGCCTTC ACGGAAGAAG ACACGCTGCT CCTGCGGACG
CTCGCTGACT TGCTCGCCAC CGCGCTGCAC AACGCCTTTG TCTTCCAGAA AATGCAGCAG
CAGTCCATTA CAGACGCGCT CACCGGCAGC AAGACGCGCC GTTACTTCCT GGAAGCTCTG
CAATCAGAAT GGAAGCGCGC CTCGCGTTCC ACGCGACCGT TCTCGGTGGT GATGATCGAC
CTCGACAAGT TCAAGCAGGT CAACGACACC ATGGGCCATC TCGAGGGCGA TCTCGTGCTC
GCTCGCATTG CGCGCCTGCT CGAACAGAAA TGCCGCCAGT CGAATGTGGT TGCCCGCTTC
GGCGGCGATG AGTTTGTCAT CCTCATGCCA GAAACCGGTG TCGACCAGGC CCAGATTCTC
GCCGAACGCC TACGCCTCTG GATCGCGACC GATCCGATGC TGAGCGAGCA CCAGATCACC
GGCAGCTTCG GCGTTGCGAC TTATCCCATT CACGGCTCTT CGGTCGAAGA CATCATGCGC
GTGGCTGATG CCGGCATGTA TGTCTCCAAG CATGCTGGCG GCAACAAGGT CGCCACCGCC
GACGAATTCA TCGACGGCCA GAACACCTCC GTCCAACGTC AGTTGATCAG CGCTTACGTC
GAAGGTTTCC TCCAGCGTGA ACACTATGGT CCCGAATACA CATCCGAACT CGTCAGTGCA
TTGAAGAAGT TTTCTGAGAA CGAAGCTGAG GGCAAGCGCG AAGTCATGAT GGACGCCATC
CTCGCGCTCA ATCGTGCGAG TGAATCGCGT GAGCTCTTCG CCTCCGGACA CGGTGAGCAG
GTCGCGCGCA CTGCGGAAAT CATCGCCCGC GAATTAGGAA TTGGTGGGCA AGATATTCAG
GACCTCATCT TCGCCGCGCG CATTCACGAC GTCGGCAAGA TCGTCGTCCC GGAGAAGATC
CTCAACAAAC CGGCGATGCT GACCGAAGAC GAGCACTATC TCGTCGCCAT GCACGCCAAC
GTCGGCGCCG AGATTATCGA CGCCATCCCC GACGCCCAGC ACATTCGCCA GATGGTTCGC
CATCACCACG AGGCCTTCGA TGGCTCCGGC TATCCCGACG GTCTCAAGGG CGAACAGATC
CCGCTCTACG CGCGCATCAT CTCCGTCGCC GAGGCCTACG TCTCGATGAT GGTCGACCGC
TCCTACCGCG CCGCCCGCAG CCAGGCCGAC GCCGTCCGCG AACTCGAAAG CCGCAGCGGC
TCGCAGTTCG ATGGCATGCT GGTGAGAATC CTAATTCGCC AGTTCAAGGC CGAAAGAGCG
GCGCAAGGGA ACGACTAG
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| Protein sequence | MEPLLAGTVF VPGLVALAFL LVFAYLQRQS SERYFHSWQW FWFANTAYYA LVAVADTHPK
IPAYASLAHT AEICGAVALF VSARSFAKTE PPAWTKYLVL CALIYWTALH AIPPLRVMVR
PYLHAWIAVL VVLLLATMEY ARVAYQRDSA GLRWMTASTA LWIVMQAGKE IPPSLLVGRY
LHRGSEYLEI MPLLLLGTAM VVVLFDDERR AIQENALAFS SLDIDPTTPV TREQIQPSIE
SLLTRFMSLL RLEQAVLYVS EPWRGSVPSV ARGFSPDFIT RLEVQNAGDY LADIAFRRGG
ILSIHSLKEL QGPMRSAAHP GLTSLVNTLK EENISRFSAV CLQTRERNMG VVIFPHGKRH
AFSASRLRLL LSVSMQMGMT LENYLLVHDA HRRTKEFELL TQIGQVISSR LDPDEVLAAV
HRELGRLFDT SNFYVAFLEG LELRYEFETV GAIRQPRRSR RSKNGLSDFV IRTGQPILIR
SDMKRVSQRL GIEPSSHPAK CFIGVPIRIG AVSVGVVAAL NFDREFVYEQ RDVEVLATAA
GQVAVAIENA RMFAHEQRRA RYLSFLNNVS QTAISSQNAE EMLSEIVGQI QKNFNYDHIG
IGILDYATKE IEIKAEAGTT AHAKGKRVAL GVGVLGRVAR TGDTSLVQDT AATHLAGILP
DSRSALCIPI TYAEQLLGVL NIESRRENAF TEEDTLLLRT LADLLATALH NAFVFQKMQQ
QSITDALTGS KTRRYFLEAL QSEWKRASRS TRPFSVVMID LDKFKQVNDT MGHLEGDLVL
ARIARLLEQK CRQSNVVARF GGDEFVILMP ETGVDQAQIL AERLRLWIAT DPMLSEHQIT
GSFGVATYPI HGSSVEDIMR VADAGMYVSK HAGGNKVATA DEFIDGQNTS VQRQLISAYV
EGFLQREHYG PEYTSELVSA LKKFSENEAE GKREVMMDAI LALNRASESR ELFASGHGEQ
VARTAEIIAR ELGIGGQDIQ DLIFAARIHD VGKIVVPEKI LNKPAMLTED EHYLVAMHAN
VGAEIIDAIP DAQHIRQMVR HHHEAFDGSG YPDGLKGEQI PLYARIISVA EAYVSMMVDR
SYRAARSQAD AVRELESRSG SQFDGMLVRI LIRQFKAERA AQGND
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