| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0033 |
|---|
| Symbol | |
|---|
| ID | 4071738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 29683 |
|---|
| End bp | 30369 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637982033 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_589112 |
|---|
| Protein GI | 94967064 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.144848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGG CTGCGATCTT CGATATTGAC GGCACGCTTG TTGACTCAGT GGACCTCCAC
GCCGAGGCTT GGGTGCGCGC GTTCCACCGC TTTCGTTATC AGCACGTAAC GTTCGCCGAG
GTTCGCTCGC AAATCGGCAA AGGCGGCGAT CAACTCATGC CCGTCTTTAT CCCGCAGCAG
GACCTGGAGC GGATTGGCGA TGCGTTAGAG CAATGGCGCT CGGAACTCTT CCGTCGCGAA
TACATGCCTC ACGTGAAGCC ATTCCCCATG GTGCGCGAAC TCTTTGAGCA TTTGAAGAAC
GATGGCTGGC AGATCGCGCT GGCGTCGTCA TCGAACAAGC AGGACCTGGA GCAGTATAAA
AAGATTGCGA ACATCGGTGA TCTTCTGGAA GCAAGCACCT CCGCCGATGA CGCAGAACGC
TCCAAGCCGC ATCCCGACAT CTTTGCCGCG GCGCTCGATC ATCTTGGCGG ACTGAAGCCG
ACTGAAGTTG TGGTGGTGGG TGATACACCC TATGACGCCG AGGCTGCGCG CAAGCTCGGG
GTCCGCGAGA TTATCGGCGT GTTGTGCGGC GGATTTCGGG AAGATGATCT GCGCAAGTCA
GGATGCACCG CGATTTATCC CGAGCCGGCG GACATCCTGG AGCACTACGC CGAATCCGCA
TTCGGAAGAG CGCGTAAGGC GGCTTAG
|
|---|
| Protein sequence | MLKAAIFDID GTLVDSVDLH AEAWVRAFHR FRYQHVTFAE VRSQIGKGGD QLMPVFIPQQ
DLERIGDALE QWRSELFRRE YMPHVKPFPM VRELFEHLKN DGWQIALASS SNKQDLEQYK
KIANIGDLLE ASTSADDAER SKPHPDIFAA ALDHLGGLKP TEVVVVGDTP YDAEAARKLG
VREIIGVLCG GFREDDLRKS GCTAIYPEPA DILEHYAESA FGRARKAA
|
|---|
| |