| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acel_1008 |
|---|
| Symbol | |
|---|
| ID | 4485012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidothermus cellulolyticus 11B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008578 |
|---|
| Strand | + |
|---|
| Start bp | 1113431 |
|---|
| End bp | 1114960 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639729783 |
|---|
| Product | UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| Protein accession | YP_872767 |
|---|
| Protein GI | 117928216 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
|---|
| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.330059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0128737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGG TGAGCGTCGT CCCCGAATGG TTGTCGGACG CAGGCCATGA CGCCCCCTGG
TCGCAGCTCA CCGTCTGCGT CGCCGGAGTG GGGATCTCCG GCCGGGCCGC GGCCCGGGTG
CTGGCCGCCC TCGGTGCCCA GGTCATCGCC GTCGATGACC GGGACGGCGA ACCCGAGCGT
GCAGCGGCCG CTGAGTTGGC CAGGCTCGGC GTCACCGTCC GGTTGGGGGA CGGCGCGACG
TTCCCGGACG GCGTCCAGCT GATCGTGACC TCGCCGGGGT GGCGGCGGGA ATCCCCACTC
TTCGCCGCAG CTGCGGACCG GGGTGTGCCG GTCTGGGGGG AGCCTGAGCT CGCCTGGCGG
TTGCGTCGTC CCGGGGACGC CGAGTGGCTT GTGATCACGG GAACGGATGG CAAGACGACG
ACGACGCTCA TGCTGGAGTC GATCCTGCGG GCCGCCGGGC TGCGGACGAT AGCGGCAGGC
AACATCGACG TGCCGCTGGT CGAGGTCGTC AACTCCGGTT ACGACGTTCT TGCCGTGGAA
CTCGGCAGTT TTCAGCTGCA CTGGTCCCCA TCCGTCGCGC CGAAGGCTGC GGCCGTCCTG
AACGTTGCTC CTGATCACCT CGACTGGTGG GGCGGATCGT TCACCGATTA CGCCAACGCT
AAGGGCCGGG CGTTCGCCCA TCCGCGGACC TGCGCGATCG GCAACCTGGA CGACCCGCAG
ACGGTCCGGT TGCTGGCCCG CGCACCGGGG CGGCGCGTCG GATTCACCCT GCACTCACCC
CGGCCCGATC AGGTCGGAGT TCACGACGGC GTCCTCCTTG ATCGAGCGTT CGTTCCCGAC
CCGGCTCGCG ACGTCGTCGA GCTTGCGACG GTCACCGACA TTCCCGTTCC CGGCGCGCAC
AACGTTGCCA ATGCGCTCGC CGCCGCCGCG CTGGCCCGTT CGATCGGGGT TGAGCCGGCG
GCGATCGCGG CCGGCTTGCG CACGTTCACC CCGGCGGCGC ACCGGATCGC GACGGTCGCC
GAGGTGGACG GCGTCCGGTT CGTCGACGAC TCCAAGGCGA CCAGCCCGCA CGCTGCGGCG
GCCTCGCTCA CCTCGTTCGA CCGGATCGTG TGGATCGCCG GCGGCCTGGG CAAGGACGTC
GCCTTTGACG AGCTCGTCAG CCAGGTGGCC GATCGGCTGC GCGGCGTCGT TCTGCTCGGA
GCATGCCGGC ATGAGATCGC CGATGCTCTC CGGCGACACG CCCCGCAGGT GCCGGTCATC
GACGTCGGCG GGGCCGAGAC TGGGGACGTG CACGCCGTTC TCGATGCCGC CGTTGCGGCG
GCCGTCCGCT ACGCCGCGCC GGGCGACGTC GTCCTCCTGG CACCGGCCGC CGCGTCCTAC
GACATGTTCC GCGACTACCG GCATCGCGGC CAGGCGTTCG CGGATGCCGT CCGCCGCTAC
GCCGAGCGCC GTTCGGCGGC GGAGCGACGT GAGGCGGCTG CGCAGGTTGG ACCGTCCGGG
CCGGCGGAGA GCGCGGGCGG CTCCCGGTGA
|
|---|
| Protein sequence | MARVSVVPEW LSDAGHDAPW SQLTVCVAGV GISGRAAARV LAALGAQVIA VDDRDGEPER
AAAAELARLG VTVRLGDGAT FPDGVQLIVT SPGWRRESPL FAAAADRGVP VWGEPELAWR
LRRPGDAEWL VITGTDGKTT TTLMLESILR AAGLRTIAAG NIDVPLVEVV NSGYDVLAVE
LGSFQLHWSP SVAPKAAAVL NVAPDHLDWW GGSFTDYANA KGRAFAHPRT CAIGNLDDPQ
TVRLLARAPG RRVGFTLHSP RPDQVGVHDG VLLDRAFVPD PARDVVELAT VTDIPVPGAH
NVANALAAAA LARSIGVEPA AIAAGLRTFT PAAHRIATVA EVDGVRFVDD SKATSPHAAA
ASLTSFDRIV WIAGGLGKDV AFDELVSQVA DRLRGVVLLG ACRHEIADAL RRHAPQVPVI
DVGGAETGDV HAVLDAAVAA AVRYAAPGDV VLLAPAAASY DMFRDYRHRG QAFADAVRRY
AERRSAAERR EAAAQVGPSG PAESAGGSR
|
|---|
| |