| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acel_0200 |
|---|
| Symbol | |
|---|
| ID | 4485286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidothermus cellulolyticus 11B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008578 |
|---|
| Strand | + |
|---|
| Start bp | 212192 |
|---|
| End bp | 213682 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639728963 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
|---|
| Protein accession | YP_871960 |
|---|
| Protein GI | 117927409 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.193606 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCGG GGCGACGACG GCGGGCGCAG CGGCGCCGGT ACGGCATTCC CACGGTCGCC
GTTCTCTTAG CCGGTGCCGC TGGGTTGTTC TGGCTCACCA GCCACCGGTC GACACCGGCC
GATACCGCAC CACCGCCGGC AAGCCCTCCG CCGGTGTCGA ACGCCGCCCC GACGGACAGT
CCAGCCGCGA CCACCGCGCA GCCGCCGGAA CCGGTCCGCA GTTCAGGGAA CGAGCTGCCG
CGCGACGCGC CGATTCCCGA TCCCTCCGCC CTCCGCGCGC ATCTCGCGGC GGCACTGGGT
GTCCTTGCCG GGGACGACGC TGCGCTGGTG GTGACCGATC CGGCTACCGG CCGGGTGTTG
TTGGACGACG GAGGCAACCG CCGGATGCCG CCGGCGTCCA CACTGAAGAT TGCAACAGCG
GTGGCCGCGC TGGCCGCGCT GGACCCGCAG ACCCGATTCG CCACCTCCGT GGTGCTGCAC
GGCGATCGCG TCGTCCTCGT CGGCGGGGGT GATCCGACCC TGGCTGCCCC CGCTCCTGCG
GCGGGAGGCT CGTCGTCGGG CCCGCCAATG CCAAGCCAAC GGCTGGGCTC ATCCCTCAGG
CCGGCGCAGC TCGCTGATCT GGCCGACCGG ACGGCGTCCG AGCTGCGTGC GCTCGGACGG
CAGCGGGTCA GTCTCGGGTA CGACGCGTCA CTCTTCGTCG GCCCCGCTAC CGCGGCCGGA
TGGCAGTCGA GTTACATCGC TGAGGGTGAC GTCGCTCCGG TAAGCGCCCT GGAGGTCAAC
GAGGGCCGGG TTGATCCGGC GCGCGACGCC CGGTCCCCCG CTCCCGGCGC CAGCGCCGCG
GCGAGCTTCG CCCGGCTGCT CGCCGCCGCG GGGATCGTCG TCGAGGGCGC ACCCGTCGTG
ACCGCCGCGG CGCCGGCTGA CCGCGTGCTG GCCGTCGTCC AATCGCCCAC TCTTGCCGAC
CTGGTGCGCC AGATGCTCAC CGTGAGCGAT AACGACCTCG CCGAGGCGAT CGCTCGGCAG
GTGGCGATCG CCCGGGGATT GCCGGCGAGT TTCGCCGGCG CGACTCAGGC GATCCGTGAC
ACCCTGAACG ACCTCGGCAT CGACACCAGC GGCCTGACGA TTTCGGATGC GAGCGGGCTT
TCGACCCTCG ACCGCCTGCA ACCTCGGATG CTGACCGCCC TCCTGCGCCT CGTCCTCACG
AATGATCGAT TCTCCGCGGT TCGTGAGGGG CTGCCGGTCG CCGGCCTCAC CGGGACGCTG
GCCTCACGCT TCACCGCTCC CGCCGCCGCA CCCGGGGTCG GTGTCGTCCA CGCCAAGACG
GGCACGCTCG CCACCGTCGT CACCCTCGCC GGTTACACGA CGGACTACGA CGGGCGTGTG
CTCGCGTTCG CCGTGCTTGC CGATGCGGTT CCGCGGAGCC AGATTCGGGC CGCGGAGTCC
GCGGTCGATG CGCTGGTCGG CGCCCTGGTG ACCTGCGGCT GTGCCCGCTG A
|
|---|
| Protein sequence | MAAGRRRRAQ RRRYGIPTVA VLLAGAAGLF WLTSHRSTPA DTAPPPASPP PVSNAAPTDS
PAATTAQPPE PVRSSGNELP RDAPIPDPSA LRAHLAAALG VLAGDDAALV VTDPATGRVL
LDDGGNRRMP PASTLKIATA VAALAALDPQ TRFATSVVLH GDRVVLVGGG DPTLAAPAPA
AGGSSSGPPM PSQRLGSSLR PAQLADLADR TASELRALGR QRVSLGYDAS LFVGPATAAG
WQSSYIAEGD VAPVSALEVN EGRVDPARDA RSPAPGASAA ASFARLLAAA GIVVEGAPVV
TAAAPADRVL AVVQSPTLAD LVRQMLTVSD NDLAEAIARQ VAIARGLPAS FAGATQAIRD
TLNDLGIDTS GLTISDASGL STLDRLQPRM LTALLRLVLT NDRFSAVREG LPVAGLTGTL
ASRFTAPAAA PGVGVVHAKT GTLATVVTLA GYTTDYDGRV LAFAVLADAV PRSQIRAAES
AVDALVGALV TCGCAR
|
|---|
| |