Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aazo_4404 |
Symbol | |
ID | 9342206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | 'Nostoc azollae' 0708 |
Kingdom | Bacteria |
Replicon accession | NC_014248 |
Strand | + |
Start bp | 4484284 |
End bp | 4487784 |
Gene Length | 3501 bp |
Protein Length | 1166 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | |
Product | transcription-repair coupling factor |
Protein accession | YP_003722842 |
Protein GI | 298492665 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.353859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCTTTT CTTCTATTGT GCGTGCCTTG GCGCGATCAC CTCTCACCGC CGAACTAATT ACCAAACTCA AAAAGTACCA AGAATTGCGG TTAAATGGCA TTTCCCGTTT ACCCAAGGGT CTGGTAGCTT CAGCTTTAGC CAACAATGAG GGTAGGGATT TGTGCGTGGT CTGTGCCACT CTCGAAGAAG CCGGACGGGT TTATGCCCAA ATGGAAGCGA TGGGATGGAA AACTGTGCAT TTTTACCCTG CCGCAGAAGC TTCTCCCTAT GAACCTTTTG ACCCGGAAAC TGAGTTAAGT TGGGGACAAA TGCAGGTTTT AGCCGATTTG GTCAATGGTC AATGGTCAGT CGTCAGTAGT CAGTTACCTA ATAGGAATAC GGCCATTATT GCTACTGTAG GCGCATTACA ACCGCATTTA CCACCTCTAG AGGTATTTAG ATCTTTTTGT CTGTCCTTAA AAAAGGGTCT GGAATACGAT TTAGATGAGT TCAGTGAAAA AATCACCAGT TTGGGCTATG AACGGGTGCC GTTGGTGGAA ACGGAAGGAC AATGGAGTAG ACGGGGAGAT ATTGTGGATG TGTTTCCTGT TTCCTCGGAG TTACCAGTGC GGTTGGAATG GTTTGGGGAT GAAATCAAAC AAATTCGGGA ATTTGATCCC GCCACTCAAC GTTCTGCTTT AGATAAAGTT GAACAAATAT TTCTTACCCC AACAAGTTTT TCAGGGATTG TTTTGGCAGC ACTCAAACAG AGTTCTGAGT TTCGTGTGTT GAGTGCTGAC TTAAATTCTG ATGTAGATGA TTTGGAAAAT TTAGGACTGG AGGGAAGCAG GCGTTTTCTA GGGTTAGCTT TTGCCAAACC CGCTTCACTT TTAGATTATT TATCAGCAAA TACCCTTATT GCCATTGATG AGGTAGAACA GTGTCATGCC CATAGCGCTC GCTGGGTGGA AAATGCGGAT AGTCAGTGGA GACTTGGGAC TGGGGAAGAA TCTCAGCAAG TTCCCAAAAT TCATCGGACT TTTAATGAGT GTTTAGATGA AGCTGGAAAT TTTCAAAAGT TATATTTATC AGAATTAGCG GAAGAAAACA GCGGTACTAA TTTAGCTAGT AGACCTTTAC CTGTAACACC TCACCAGTTT GCCAAGTTAG CTGAGAAAAT TAGACAGGAA CGCGATCGCA AGTTTGCAGT TTGGCTAATT TCTGCTCAAC CTTCCCGTTC TGTTTCTCTA CTCCAAGAAC ATGATTGTCC TGCCCAGTTT ATCCCTAATC CCCGTGATTA TCAAGCGATT GGTAAACTAC AAATAAATCA TACGCCTATT GCACTCAAAT ATTCTGGTTT AGCAGAATTA GAAGGTTTCA TTTTACCTTC TTTCCGTCTT GTTATTGTTA CCGATCGCGA ATTTTATGGA CAACATTCCT TAGCGGATTT TGGTTATGTC CGCAAACGTC GCAAAGCTAT ATCTAAACAA GTTGATACCA ATAAATTACG ACCAGGAGAT TTTGTTGTTC ATCGTAGTCA CGGCATTGGT AAATTTGTCG AACTAGAAAG TTTAACAATT AATAATGAAA CCCGTGATTA TTTAGTTATT CAATATGCCG ATGGTTTGTT GAAAGTTGCT GCTGATAAAG TTGGTTCTCT ATCTCGGTTT AGAACCAGTG GAGATCAAAC ACCCGCACTA CATAAAATGA CGGGTAAAGC TTGGGATAAT ACCAAGAATA AAGTCCGTAA GGCGATTAAG AAATTAGCAG TAGATTTGTT AAAGTTGTAT GCTGCGCGAT CGCAACAACA AGGGTTTGCT TATCCCGCAG ATATGCCTTG GCAGGAAGAA ATGGAAGATT CTTTTCCATA CCAAGCTACC ACCGATCAGC TAAAAGCGGT GCAAGATGTG AAACGGGATA TGGAAAGTGA AAGACCGATG GATCGGTTAG TGTGTGGTGA TGTGGGTTTT GGTAAAACTG AAGTTGCAAT TCGGGCTATT TTCAAAGCTG TTACCGCAGG TAAACAAGTC GCAGTTTTAG CACCAACAAC TATTTTAACC CAACAACATT ATCACACAAT CAAAGAACGT TTTTCACCTT ATCCTGTAAA TGTGGGTTTA CTTAATCGTT TTCGTAGTGC GGAAGAAAAG CGTAATATTC AAAAGCGTCT GGCTACTGGA GAATTAGATA TTGTTGTAGG GACACATCAA TTATTAGGTA AAGGTGTACA ATTTCGAGAT TTGGGACTGT TGGTAATTGA TGAGGAACAA AGATTTGGTG TGAATCAAAA GGAAAAAATC AAAAGCCTGA AAACTCAAGT TGATGTTTTA ACTCTTTCTG CGACTCCCAT TCCCAGAACT TTGTATATGT CTTTATCTGG CATTCGGGAA ATGAGTTTAA TTACCACACC ACCTCCCACC AGAAGACCAA TTCAAACCCA TCTTGCACCT TTAAACCCGG AAATTGTCAG AAGTGCAATT CGGCAAGAAT TAGATAGAGG AGGGCAGGTT TTTTATGTAG TTCCGCGAGT GGAGGGAATT GAAGAAACAA CTGCAAATTT GCGAGAAATG ATACCGGGGG GAAGATTTGC AATCGCACAC GGTCAAATGG AAGAAAGCGA GTTAGAATCA ACCATGCTCA CCTTCGGAAA TAATGACGCT GATATCCTAG TTTGCACAAC AATCATTGAA TCCGGTTTAG ATATTCCGCG AGTTAACACA ATTTTAATTG AAGATGCTCA CCGTTTTGGT TTAGCTCAAT TATATCAATT ACGTGGTCGT GTGGGACGTG CAGGAATACA AGCTCACGCA TGGTTATTTT ATCATAAACA GCGTGAATTA TCCGATGCAG CCAGACTAAG ATTAAGAGCA ATTCAAGAAT TTACCCAACT CGGTTCTGGA TATCAATTAG CAATGCGAGA TATGGAAATT CGTGGTGTGG GTAACTTGTT AGGTGCAGAA CAGTCAGGTC AAATGGATGC AATCGGATTT GACTTGTACA TGGAAATGTT AGAGGAAGCA ATTCGAGAAA TTAGAGGTCA AGAAATACCC AAAGTTGATG ATACCCAAAT TGACCTTAAT CTCACCGCGT TTATTCCTTC CACTTACATT ACCGATATTG ACCAAAAAAT GAGTGCTTAT CGTGCAGTAG CAACTGCAAA ATCCAAAGAA GAATTAAAAT CCATTGCCGC GGAATGGACT GATAGATATG GAACTATACC AGTTCCAGCA AATCAACTCT TGCGAGTTAT GGAATTAAAA CAATTAGCGA GAAATATAGG ATTTAGCCGC ATTAAACCTG AGAACAAACA GCATATTGTG TTAGAAACAC CAATGGAAGA ACCAGCTTGG AATTTGTTAG CAGAAAATTT GACTGAAACT ATGCGAAATC GCTTTGTTTA TTCCAGTGGA AAGGTGACAG CAAGAGGTTT AGGTGTGTTG AAAGCCGAAC AACAATTGCA AACTTTAATA GATGCTTTCG GAAAAATGCA AGGTGCTATT CCTGAAGCAG TTTTAGTTTG A
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Protein sequence | MAFSSIVRAL ARSPLTAELI TKLKKYQELR LNGISRLPKG LVASALANNE GRDLCVVCAT LEEAGRVYAQ MEAMGWKTVH FYPAAEASPY EPFDPETELS WGQMQVLADL VNGQWSVVSS QLPNRNTAII ATVGALQPHL PPLEVFRSFC LSLKKGLEYD LDEFSEKITS LGYERVPLVE TEGQWSRRGD IVDVFPVSSE LPVRLEWFGD EIKQIREFDP ATQRSALDKV EQIFLTPTSF SGIVLAALKQ SSEFRVLSAD LNSDVDDLEN LGLEGSRRFL GLAFAKPASL LDYLSANTLI AIDEVEQCHA HSARWVENAD SQWRLGTGEE SQQVPKIHRT FNECLDEAGN FQKLYLSELA EENSGTNLAS RPLPVTPHQF AKLAEKIRQE RDRKFAVWLI SAQPSRSVSL LQEHDCPAQF IPNPRDYQAI GKLQINHTPI ALKYSGLAEL EGFILPSFRL VIVTDREFYG QHSLADFGYV RKRRKAISKQ VDTNKLRPGD FVVHRSHGIG KFVELESLTI NNETRDYLVI QYADGLLKVA ADKVGSLSRF RTSGDQTPAL HKMTGKAWDN TKNKVRKAIK KLAVDLLKLY AARSQQQGFA YPADMPWQEE MEDSFPYQAT TDQLKAVQDV KRDMESERPM DRLVCGDVGF GKTEVAIRAI FKAVTAGKQV AVLAPTTILT QQHYHTIKER FSPYPVNVGL LNRFRSAEEK RNIQKRLATG ELDIVVGTHQ LLGKGVQFRD LGLLVIDEEQ RFGVNQKEKI KSLKTQVDVL TLSATPIPRT LYMSLSGIRE MSLITTPPPT RRPIQTHLAP LNPEIVRSAI RQELDRGGQV FYVVPRVEGI EETTANLREM IPGGRFAIAH GQMEESELES TMLTFGNNDA DILVCTTIIE SGLDIPRVNT ILIEDAHRFG LAQLYQLRGR VGRAGIQAHA WLFYHKQREL SDAARLRLRA IQEFTQLGSG YQLAMRDMEI RGVGNLLGAE QSGQMDAIGF DLYMEMLEEA IREIRGQEIP KVDDTQIDLN LTAFIPSTYI TDIDQKMSAY RAVATAKSKE ELKSIAAEWT DRYGTIPVPA NQLLRVMELK QLARNIGFSR IKPENKQHIV LETPMEEPAW NLLAENLTET MRNRFVYSSG KVTARGLGVL KAEQQLQTLI DAFGKMQGAI PEAVLV
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