| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4678 |
|---|
| Symbol | |
|---|
| ID | 4669549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 5221698 |
|---|
| End bp | 5223368 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639825874 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_972987 |
|---|
| Protein GI | 120613309 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCGCCTA TGGAGTTATC ACTTGCCCTA ACAGGTTTGG CTTGGTTGGT GCCTAATCAC
TATGGGCCTT GGTCTTCTGC TTGGAATGAG GCTCTAGCCA TATTTGGGTG TATTTTTGCC
TTAATAAGCA TACTGATTCG GGGCTATCCA TGGGGTGTTT CAAGAGTGCT GATAACTTTA
TCCGCGACTT GTTTTGCTTC CATCGGTTTT CAAGTTTTCA CTGGAAAATT GCTATTCTTA
GGCGATGGCC TGATGGCGGC ATTTTATGTG TGTATATGGT TGTCTGCTAG CGCCATAGGC
GCCGCTATTT ATTTTAGTGA AAAAAAACAG GAGGCTATAA GTGTTCTGGC CTTTATTTGG
CTAGCTGGGG CAATTCTGTC AATAGCCGTT GCATTGGTTC AGTGGACGGG AGCATTCAGC
CTTGGCATCT ATGGTGTGGA TCTTCCGCCA GGCGCGCGCC CATTTGGAAA CGTTGCGCAA
CCTAATCATC TCTGCACAAT AGCTTTTATG GGAATTTGTG GAGCTGTATG GTTGTACCAG
AGACGTTTGA TAGGGATTTC ATCCTTTTGG TTGGCGGTTA TCTGTTTGAT CTTTGGAATG
GTTTTATCTC AATCACGCAC TGGTTGGTTG CAGATTGCTT GGTTTGGATT ATTTTTGATC
GCAATCCAAG GTTGGGTAAA TATTAGGATA AGAAGGTTGG AAGTATTTTT TATAATTGTT
TTCTACTTTT TTTTGGTATC GAATTTCGAT AAGCTGTCTG CTGGGCTGCT TATCCCTAGT
GCCCGCTCTA TTTCAGATCA AGTTCAGCCA GGACTGCGCA TTCCTTATTG GCTTTCCATG
CTTGATGCTA TTTCTAGAGA GCCGCTTTGG GGTTATGGTT GGCTGCAAAT AGGTGTGGCT
CAACAGACCG TCGCCTTAAG CTATTCGGGA TTCGGCTCAC TTTATGAACA TGCTCACAAT
TTTGTTCTGG ATGTAATTCT CTGGAACGGC CTGCTGTTTG GTGGATTTAT ATTAGCTTTG
GCGTTGTTGT GGATTTGGCA GGTGAGATCG GCTGCTTTAG ATCGTTCCAT ATTTTGGCTT
GCTATGGCAC TGGGCGGTAT ATTTATACAT GGAATGTTAG AGTTTCCTTT GGAGTACTCA
TATTTCCTGA TACCTGTTGG TTTGATTATG GGCGCAATGA GCGCTTCCCA GTCTGAAAAC
GGCCAATTGA TATTTTTTGC GAGGAACGTG GCTCTCTTGT TTTTGGTGGG ACTGTCAATC
GCTTTTTTTC TGATAGTAAA AGATTATTTT ACGGCAGAAG AGAATTATCG CCAATTACGT
ATAGAGTCCG CTAGAATTGG TACCGATAGA ATCACTTCGC CGGCACCAGA TCTTTTGCTT
CTAAATCAAC TCGAGGCATT TTTGAGGTTT GCTCGAATCG AAGCGAAGCC TGGCATGTCG
GCCAGTGAAT TGGATTTTAT GAAGGCGGTC GCGGAACGAT ATGGGTATCC CCCCGTACTT
TTCCGTTATG CATTGGCTTT GGGCATCAAC GGAAAAGGAG AAGTTGCTCG GGATATTCTG
GAGAAGATAT GCAGAATCCA TGAAAATCAA CGTTGCGAAG AGGCCGTCGA AGGGTGGAGA
GTGATGGAAA ATAAATATCC AGAACTCAAA GTTCTTCGCT GGAGGAGTTA G
|
|---|
| Protein sequence | MPPMELSLAL TGLAWLVPNH YGPWSSAWNE ALAIFGCIFA LISILIRGYP WGVSRVLITL
SATCFASIGF QVFTGKLLFL GDGLMAAFYV CIWLSASAIG AAIYFSEKKQ EAISVLAFIW
LAGAILSIAV ALVQWTGAFS LGIYGVDLPP GARPFGNVAQ PNHLCTIAFM GICGAVWLYQ
RRLIGISSFW LAVICLIFGM VLSQSRTGWL QIAWFGLFLI AIQGWVNIRI RRLEVFFIIV
FYFFLVSNFD KLSAGLLIPS ARSISDQVQP GLRIPYWLSM LDAISREPLW GYGWLQIGVA
QQTVALSYSG FGSLYEHAHN FVLDVILWNG LLFGGFILAL ALLWIWQVRS AALDRSIFWL
AMALGGIFIH GMLEFPLEYS YFLIPVGLIM GAMSASQSEN GQLIFFARNV ALLFLVGLSI
AFFLIVKDYF TAEENYRQLR IESARIGTDR ITSPAPDLLL LNQLEAFLRF ARIEAKPGMS
ASELDFMKAV AERYGYPPVL FRYALALGIN GKGEVARDIL EKICRIHENQ RCEEAVEGWR
VMENKYPELK VLRWRS
|
|---|
| |