| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4531 |
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| Symbol | rpoB |
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| ID | 4669794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 5038382 |
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| End bp | 5042506 |
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| Gene Length | 4125 bp |
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| Protein Length | 1374 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639825720 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_972842 |
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| Protein GI | 120613164 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCCAA CATCCACGTA CAGCTATACC GAACGCAAAC GCATCCGCAA GAGTTTCGGT
AGCCGCGACA GCGTGCTCAA AGTGCCGTAC CTGCTGCAGA TGCAGAAGGA CGCGTACACC
GCTTTCCTCC AAGCGGACAT GGCACCGCAG AAACGCACCA ACGAAGGCCT GCAGGCCGCA
TTCAACGCAG CGTTCCCGAT CGTCTCGCAC AACGGCTTCG TCGAGATGAA GTTCGTGGAA
TACAACCTGG CCAAGCCGGC GTTCGACGTG CGCGAGTGCC AGACCCGTGG CCTGACCTTC
GCCTCGGCCG TGCGCGCCAA GGTGCAGCTC ATCATCTACG ACCGCGAGTC CTCGACGTCG
CAGTCCAAGG TGGTGAAGGA AGTGAAGGAG CAGGAGGTCT ACATGGGCGA GGTGCCCCTG
ATGACCGACA AGGGCTCGTT CATCATCAAC GGCACCGAGC GCGTGATCGT GTCGCAGCTG
CACCGTTCGC CCGGCGTGTT CTTCGAGCAC GACAAGGGCA AGACGCACAG CTCCGGCAAG
CTGCTGTTCT CCGCACGCAT CATTCCCTAC CGCGGTTCCT GGCTGGACTT CGAGTTCGAC
CCGAAGGACA TTCTGTATTT CCGCGTGGAC CGTCGCCGCA AGATGCCGGT CACGATCCTG
CTGAAGGCCA TCGGCCTGAA CCCGGAATCG ATCCTGGCGA ACTTCTTCGT CAACGACAAC
TTCCGCCTGA TGGACAGCGG CGCGCAGATG GAGTTCGTGG CCGACCGCCT GAAGGGCGAA
GTGGCGCGCT TCGACATCAC CGACAAGTCC GGCAAGGTCG TCGTGGCCAA GGACAAGCGG
ATCACCGCCC GCCACACCCG TGAACTGGAG CAGTCCGGCA CGACCCACAT CAGCGTGCCG
GAAGATTTCC TGATCGGCCG CGTGGTCGCG CGCAACATCG TGGACGGCGA CACCGGCGAG
ATCGTGGCCA AGGCCAACGA GGAACTCACG GAAGCGCTGC TGAAGAAGCT GCGTTCGGCC
GGCGTGCAGG ACCTGCAGGT CATCTACACG AACGAACTGG ACCAGGGCGC GTACATCTCG
CAGACGCTGC GCATCGACGA GACGGTGGAC GAGTTCGCCG CCCGCGTGGC CATCTACCGC
ATGATGCGCC CCGGCGAGCC GCCGACGGAA GACGCCGTGC AGGCCCTGTT CCAGCGCCTG
TTCTACAACC CGGACACGTA CGACCTGTCG CGCGTGGGCC GCATGAAGTT CAACGCCAAG
ATCGGCCGCG ACGAATCCAC CGGCCCGATG GTGCTGTCCA ACGACGACAT CCTGGCCGTG
GTGAAGATCC TGGTGGACCT GCGCAACGGC AAGGGCGAAG TCGATGACAT CGACCACCTG
GGCAACCGCC GCGTGCGTTG CGTGGGCGAG CTGGCCGAGA ACCAGTACCG CACGGGTCTG
GCGCGTATCG AGAAGGCCGT GAAGGAGCGT CTGGGCCAGG CGGAGCAAGA GCCGCTGATG
CCGCACGACC TGATCAACAG CAAGCCGATC TCGGCCGCCC TGAAGGAGTT CTTCGGTGCG
TCGCAGCTGT CGCAGTTCAT GGACCAGACC AACCCGCTGG CGGAAATCAC GCACAAGCGC
CGCGTCTCGG CCCTGGGCCC GGGCGGTCTG ACGCGCGAGC GCGCCGGCTT CGAAGTGCGC
GACGTGCACG TCACGCACTA TGGCCGCGTC TGCCCTATCG AAACGCCTGA AGGCCCGAAC
ATCGGCCTGA TCAACTCGCT GGCCCTGTAC GCCCGCCTGA ACGAGTACGG CTTCATCGAG
ACGCCGTACC GCCGCGTGGT GGACGGCAAG GTGACCGACC AGATCGACTA CCTGTCGGCC
ATCGAGGAAG GCAAGTACGT CATCGCCCAG GCCAACGCCG CGCTGGATGC CGAAGGCCGC
CTGACCGGCG ACCTGGTGTC GGCCCGCGAG AAGGGTGAAT CCACGCTGCT GTCCGCCGAG
CGCGTGCAGT ACATGGACGT GTCGCCCGCG CAGATCGTGT CGGTGGCTGC CTCGCTCGTG
CCCTTCCTGG AGCACGATGA TGCGAACCGC GCACTGATGG GCGCCAACAT GTCGCGCCAG
GCCGTGCCCG TGCTGCGTCC GGAAAAGCCC ATGGTGGGCA CGGGCATCGA GCGCGTGGCG
GCCGTGGACT CCGGCACGGT GGTGACGGCC AACCGCGGCG GTATCGTGGA CTACGTGGAT
GCCACCCGCA TCGTGGTGCG GGTGAACGAC GACGAAGCCG TGGCCGGTGA AGTCGGCGTG
GACATCTACA ACCTGATCAA GTACCAGCGT TCCAACCAGA ACACGAACAT CCACCAGCGC
CCGATCGTGA AGAAGGGCGA CGTGCTGGCC AAGGGCGACG TGATCGCCGA CGGTGCCTCC
ACCGACCTGG GCGAGATCGC CATCGGCCAG AACATGCTGA TCGCGTTCAT GCCCTGGAAC
GGCTACAACT TCGAAGATTC GATCCTGATC TCCGAACGCG TGGTGGCCGA AGACCGCTAC
ACCTCGATCC ACATCGAGGA ACTGGTGGTG ATGGCCCGCG ACACGAAGCT GGGCGCCGAG
GAAATCACGC GCGACATCCC GAACCTGTCG GAACAGCAGC TGAACCGCCT GGACGAGTCC
GGCATCATCT ACGTGGGGGC GGAAGTGCAG CCCGGCGACA CGCTGGTGGG CAAGGTCACG
CCGAAGGGCG AGACCACGCT GACGCCGGAA GAGAAGCTGC TGCGCGCGAT CTTCGGCGAG
AAGGCTTCCG ACGTGAAGGA CACCTCGCTG CGCGTGGACC AGGGCTCTTC GGGCACCGTG
ATCGACGTGC AGGTGTTCAC GCGCGAAGGC ATCCAGCGCG ACAAGCGCGC CCAGCAGATC
ATCGACGATG AGCTCAAGCG CTTCCGCCTG GACCTGAACG ACCAGCTGCG CATCGTGGAG
GCCGACGCGT TCGACCGTAT CGAGAAGCTG CTGAACGGCC GCGTGGCCAA CGGCGGCCCG
CAGAAGCTGG CCAAGGGCAC GAAGATCGAC AAGGCCTACC TGGCTTCCGT CGAGAAGTTC
CACTGGTTCG ACATCCGCCC GGCGGAAGAC GAAGTGGCGA CGCAGCTCGA GTCCATCAAG
AACGCCCTGG AGCAGACGCG CCACAGCTTC GACCTGGCTT TCGAAGAGAA GCGCAAGAAG
CTCACGCAAG GCGACGAGCT GCCTGCCGGC GTGCTGAAGA TGGTGAAGGT GTACCTGGCC
GTCAAGCGCC GCCTGCAGCC CGGCGACAAG ATGGCCGGCC GCCACGGCAA CAAGGGCGTG
GTGTCCAAGA TCGTTCCGGT CGAGGACATG CCCTACATGG CCGACGGCAC GCCTGCCGAC
ATCGTCCTGA ACCCGCTGGG CGTGCCTTCG CGGATGAACA TCGGGCAGGT GCTGGAAGTC
CACCTGGGCT GGGCCGGCAA GGGCATCGGC CAGCGCATCG GCGACATGCT GCGCGACCAG
GCCAAGGCGG CCGAGATGCG CAAGTTCCTG GAAGAGGTCT ACAACTCGCG CGGCCGCAAG
GAAGACCTGT CGGTGCTGAG CGACGACGAG GTGATGGCCA TGGCCGCCAA CCTGACCAAC
GGCGTGCCCT ATGCGACGCC GGTGTTCGAC GGCGCGTCGG AAGCCGAGAT CAAGGACATG
CTGAAGCTGG CCTATCCGGA CGACATCAAG GAGCGCAAGG GCCTGACCGA GAGCCGTACC
CAGGCCTACC TGTACGACGG CCGCACGGGC GAGCGCTTCG AGCGCCCGAC GACCATCGGC
TACATGCATT ACCTGAAGCT GCACCACCTG GTGGACGACA AGATGCACGC CCGTTCCACC
GGCCCGTACT CGCTCGTCAC GCAGCAGCCG CTGGGCGGCA AGGCCCAGTT CGGCGGCCAG
CGTTTCGGGG AGATGGAAGT GTGGGCGCTG GAAGCCTATG GCGCCTCGTA CGTGCTGCAG
GAAATGCTCA CCGTGAAGTC CGACGACGTG CAGGGCCGTA CCAAGGTGTA CGAGTCCATC
GTCAAGGGCG AACATGCGAT CGAGGCAGGC ATGCCCGAGT CGTTCAATGT GCTGGTCAAG
GAAATCCGTT CCCTGGGCCT GGACATCGAA CTGGAACGTT CTTAA
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| Protein sequence | MAPTSTYSYT ERKRIRKSFG SRDSVLKVPY LLQMQKDAYT AFLQADMAPQ KRTNEGLQAA
FNAAFPIVSH NGFVEMKFVE YNLAKPAFDV RECQTRGLTF ASAVRAKVQL IIYDRESSTS
QSKVVKEVKE QEVYMGEVPL MTDKGSFIIN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK
LLFSARIIPY RGSWLDFEFD PKDILYFRVD RRRKMPVTIL LKAIGLNPES ILANFFVNDN
FRLMDSGAQM EFVADRLKGE VARFDITDKS GKVVVAKDKR ITARHTRELE QSGTTHISVP
EDFLIGRVVA RNIVDGDTGE IVAKANEELT EALLKKLRSA GVQDLQVIYT NELDQGAYIS
QTLRIDETVD EFAARVAIYR MMRPGEPPTE DAVQALFQRL FYNPDTYDLS RVGRMKFNAK
IGRDESTGPM VLSNDDILAV VKILVDLRNG KGEVDDIDHL GNRRVRCVGE LAENQYRTGL
ARIEKAVKER LGQAEQEPLM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLAEITHKR
RVSALGPGGL TRERAGFEVR DVHVTHYGRV CPIETPEGPN IGLINSLALY ARLNEYGFIE
TPYRRVVDGK VTDQIDYLSA IEEGKYVIAQ ANAALDAEGR LTGDLVSARE KGESTLLSAE
RVQYMDVSPA QIVSVAASLV PFLEHDDANR ALMGANMSRQ AVPVLRPEKP MVGTGIERVA
AVDSGTVVTA NRGGIVDYVD ATRIVVRVND DEAVAGEVGV DIYNLIKYQR SNQNTNIHQR
PIVKKGDVLA KGDVIADGAS TDLGEIAIGQ NMLIAFMPWN GYNFEDSILI SERVVAEDRY
TSIHIEELVV MARDTKLGAE EITRDIPNLS EQQLNRLDES GIIYVGAEVQ PGDTLVGKVT
PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGSSGTV IDVQVFTREG IQRDKRAQQI
IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LNGRVANGGP QKLAKGTKID KAYLASVEKF
HWFDIRPAED EVATQLESIK NALEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA
VKRRLQPGDK MAGRHGNKGV VSKIVPVEDM PYMADGTPAD IVLNPLGVPS RMNIGQVLEV
HLGWAGKGIG QRIGDMLRDQ AKAAEMRKFL EEVYNSRGRK EDLSVLSDDE VMAMAANLTN
GVPYATPVFD GASEAEIKDM LKLAYPDDIK ERKGLTESRT QAYLYDGRTG ERFERPTTIG
YMHYLKLHHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGASYVLQ
EMLTVKSDDV QGRTKVYESI VKGEHAIEAG MPESFNVLVK EIRSLGLDIE LERS
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