Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_4416 |
Symbol | |
ID | 4665601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | + |
Start bp | 4911213 |
End bp | 4911929 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639825607 |
Product | FliA/WhiG family RNA polymerase sigma factor |
Protein accession | YP_972730 |
Protein GI | 120613052 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.197457 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACACCG CCAAAGGACA GCTCAACCGC GATGCATTGA TCCGCCAGCA CGCGCCGCTG GTCCGCCGGA TCGCGCACCA CATGATCGCG AAGCTTCCGC CCAACGTGGA GCTGGACGAT CTGATCCAGG TCGGCATGAT CGGGCTCAAC GAGGCGCTGT CGCGCTACGA GGTGACGCAG GGCGTGCAGT TCGAGACTTT CGCCTCCCAG CGCATCCGCG GCGCCATGCT CGACGAGCTG CGCGAGGGCG ACTGGATGTC GCGCAGTTCG CGCAAGAGCC AGAAGGAGAT CGAGCACGCC GTGACCCGGC TGGAGCAGAA GCTCGGCCGC AGCCCGCACG AATCCGAGAT CGCCACGGAG CTCGAACTCA GCCTGGCGGA ATACCAGTCC CTGCTGAGCA AGGTGCGCGG TACCCAGCTG GTTTACCTCG AAGACATGAC GCGCGGCGAC GACGACGATG ACGGTTTCCT CGACCGCCAC GTGGCCGACA GCGCGGCCGA TCCCATGGCC ATGCTGCGCG ACCAGCGCCT GCGCGCCTCC CTGGTGGCGG CGATCAAGGC GCTGCCCGAA CGGGAGCAGC AGATCATGGG CATGTACTAC GAGCACGACA TGAACCTGAA GGAGATCGCC GCGGTGCTGG GCGTGACCGA ATCGCGCATC TGCCAGCTGC ACAGCCAGTC GATCGCCCGG CTGCGCGCGA AGATGCGCAG CCATTGA
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Protein sequence | MYTAKGQLNR DALIRQHAPL VRRIAHHMIA KLPPNVELDD LIQVGMIGLN EALSRYEVTQ GVQFETFASQ RIRGAMLDEL REGDWMSRSS RKSQKEIEHA VTRLEQKLGR SPHESEIATE LELSLAEYQS LLSKVRGTQL VYLEDMTRGD DDDDGFLDRH VADSAADPMA MLRDQRLRAS LVAAIKALPE REQQIMGMYY EHDMNLKEIA AVLGVTESRI CQLHSQSIAR LRAKMRSH
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