Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_4009 |
Symbol | |
ID | 4669467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 4454162 |
End bp | 4456432 |
Gene Length | 2271 bp |
Protein Length | 756 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639825196 |
Product | Rhs element Vgr protein |
Protein accession | YP_972324 |
Protein GI | 120612646 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0849352 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACGCC GCGTCACCAT CCGGACGCCC CTGGGAGAGC AGCTGCAATT CCGGCAGTTG CGGGGCAGCG AGGAGCTGAG CCAGCTTTTC TCCTTCGACA TCGACCTGCT CTCGGAAGGC CGCGACATCG ATCCCAAGGC CTTGCTCGGC AAGACGGCGA CGGTGGAGAT CGAGACCGAA GGCGGTGGCA AGCGTTACCT GGACGGCCTG GTCACGCGCT TCGGCATGCA GGGGCAGGAC CATCGGCTGT ACTCCTACCA CCTGCGCCTG CAGCCCTGGC TGTGGGTGGC CACGCGGCGG CAGGACTTCC GCATCTTCCA GTTCAAGACC GTCCCGCAGA TCGTCCAGGA AGTGCTGGGT CGCTACGGTT ACCCCATGCA GCTCAAGCTC ACGCGCGCCT ACCGTGCCTG GGATTACTGC GTGCAGTACG GCGAGAGCGA CTTCGACTTC GTTTCCCGCC TGCTCGAGCA TGAAGGGGCG TACTACTACT TCCAGCACGC GAGCGGCCAG CACACCCTGG TGATCGCCGA CGACATCGTG GCCGGCCACG AGCCTTTGCC GGGCGCGGCC GTGATCCCGT TCTACCCACC CGAGAAGTCG GCCGTCGCGG ACCGCGAGAA CATCCACGCC TGGACCCTGG GCGAGGAGAT CAAGTCCGGC CGCTACTACA ACGACGACTA CGACTTCCGC AAACCGAGGT CGGACCTCTC CAACATGCGC CAGCAGCCCC CGGGGCATGC GCACGATGCC TACGAGATCT ACGAATGGCC GGGCGGCTAC GTGCAGCATG GCGATGGTGA GCAGTACGCC CGGGTACGCC TGCAGGAAGG CCTGACGGGC CACAGCGTCG TCAAAGGCGA ATCGCGCCAC CGCAGCCTCG CGACGGGCTA CACCTTCACG CTGGAGAACT ACCCGCGGGG CGACCAGAAC CGGCAGTACC TCATCACCGG CGTCACCTAC CACCTGCACG AGAACCCGAG AAGCTCATCC TTCAACAGCG CCAAGCCGGG TGAATCGCTC AAGCACAACG AAGAGCAGGG GTTGTTCCAG AAGTTCAGCC TCACGGCCCA GCCCACGAGC CTGCCCTACA CCCCGGCCAG AAAGACCCCC AAACCCCGCA CGACCGGCCC GCAGACCGCC GTCGTGGTCG GCCCGGCGGG CGAGGAAATC TGGACGGACG AGTACGGCCG CATCAAGGTG CAGTTCCACT GGGACCGGCT GGGGGCGATG GACGAGAACT CCAGTTGCTG GATGCGGGTG GCCACGAGCT GGGCGGGCTC GGGGTTCGGA GCGATCTCGA TCCCGCGCAT CGGGCACGAA GTGGTGGTCG ACTTCCTCAA CGGCGATCCT GACTATCCGC TGGTCGTGGG CTGCGTGTAC AACGCGGCGA ACATGCCGCC CTGGGCCTTG CCGGGCAATG CCACGCAGTC GGGCATCAAG ACCAAGTCCA GCAAGGGCGG GGCCTTCGGC GACGGGATGA AGAACGGCGC GGGCGATGCC AACGCGATCC GCTTCGAGGA CAAGAAGGGC GCAGAGCAAT TATGGCTGCA TGCGCAGAAG GACCAGCTCA TCGAGGTGGA AAACGACGAG GACCACTGGG TGGGCCAGGA CCGGCGCAAG ACCATCGACC GGGACGAGAC GAACGTGATC CACCGGGACC GGACGGAAAC GGTGGACCGC AACGAGAAAA TCACGGTGCA TGGCTGGCGC ACCGAGGAAG TGGATGGCGA CGAGACCATC ACCATCCACT CCAACCGCAA GGAGCGTGTG GACCACGACG AGACGATCTC GATCGGCGAC AACCGCGACG AGACCGTGGG CGCCAACGAA GACATCCGCA TCGGCAGCAA TCGCAGCAAG ACCGTCGGGC AGAGCGAGAA GGACCGCATC GGCACCAGCT GGAACATCCG GGTGGGCACG ATGAAGACCG AGACCATCGG GATGACGGCC ATGCAGAACG TGGGCCTGGC CAAGATGGTG AACGTGGGGC TGGCCTACAG CGTCAACATC GGCGGCGTGC GCAGCGACAT CGTGGGCGCC AACTGGACCC GCACGGTCAT CGGCAGCGAC TCGGTGAGCG TGGGCTCGGA CCGCAAGGCG AGCGTGAGCG GCACGGACAG CCTGGAGGTG TCTGGCGCGC TCACGGTGAA GGCCAGGACC ATCACGCTGG AGGCGGGCGA CGAGATCACG CTGCGCTGCG GATCGAGCAC GGTGCGGCTG ACGCCCGCGC TCATCGAAGT GCTGTCCTCG CTGGACAAGC TCAACTGCTA G
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Protein sequence | MTRRVTIRTP LGEQLQFRQL RGSEELSQLF SFDIDLLSEG RDIDPKALLG KTATVEIETE GGGKRYLDGL VTRFGMQGQD HRLYSYHLRL QPWLWVATRR QDFRIFQFKT VPQIVQEVLG RYGYPMQLKL TRAYRAWDYC VQYGESDFDF VSRLLEHEGA YYYFQHASGQ HTLVIADDIV AGHEPLPGAA VIPFYPPEKS AVADRENIHA WTLGEEIKSG RYYNDDYDFR KPRSDLSNMR QQPPGHAHDA YEIYEWPGGY VQHGDGEQYA RVRLQEGLTG HSVVKGESRH RSLATGYTFT LENYPRGDQN RQYLITGVTY HLHENPRSSS FNSAKPGESL KHNEEQGLFQ KFSLTAQPTS LPYTPARKTP KPRTTGPQTA VVVGPAGEEI WTDEYGRIKV QFHWDRLGAM DENSSCWMRV ATSWAGSGFG AISIPRIGHE VVVDFLNGDP DYPLVVGCVY NAANMPPWAL PGNATQSGIK TKSSKGGAFG DGMKNGAGDA NAIRFEDKKG AEQLWLHAQK DQLIEVENDE DHWVGQDRRK TIDRDETNVI HRDRTETVDR NEKITVHGWR TEEVDGDETI TIHSNRKERV DHDETISIGD NRDETVGANE DIRIGSNRSK TVGQSEKDRI GTSWNIRVGT MKTETIGMTA MQNVGLAKMV NVGLAYSVNI GGVRSDIVGA NWTRTVIGSD SVSVGSDRKA SVSGTDSLEV SGALTVKART ITLEAGDEIT LRCGSSTVRL TPALIEVLSS LDKLNC
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