Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_3406 |
Symbol | tolB |
ID | 4667774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 3761920 |
End bp | 3763236 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639824602 |
Product | translocation protein TolB |
Protein accession | YP_971737 |
Protein GI | 120612059 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.569267 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCAG ACCGCCCATC CCATCCTCTC GCCGCGGCCC TGCCGCACGC CACGCGCCGC CACGCCATCG TGGCCCTCGC CTCCGCAGCC TCCTTTCCCG CCTTCGCGCA GTTCCGCGTC GAGATCACCG GCGTGGGCCT GACCCAGTTG CCGACGGCCA TCGCGCCGTT CCGCGGCGAG GCGGGTGCAC CGCAGAAGAT CTCCGCCATC GTGCAGGCCG ACCTGGAGCG CAGCGGCCAG TTCCGTGCCG TGGACGCCTC CGGCCCGCAA CTGGACGAAA ACTCCCGCCC CGACGTGGCC CTCTGGAAGC AGAAGGGCGC CGATTCGCTC ACCACCGGCA GCATCACGCG CCTGCCGGAC GGCCGCTACG ACGTGCGCTT CCGCCTCTGG GAGACGGTGC GCGGCGAGGA CAAGGGCGGC CAGAGCTTCG TGGTCACGCA GGCCGACCTG CGGCTCGTCG CCCACCGCAT CGCCGACTAC GTGTACGAGA AGCTCACCGG CCAGCGCGGC ATCTTCTCGA CCCGCATCGC CTACGTCACC AAGGCCGGCA GCCGCTACAG CCTCTGGGTG GCGGACGCCG ACGGCGAGAA CGCCCAGTCG GCGCTCTCCA GCCCCGAGCC CATCATCTCG CCGGCCTGGT CGCCCTCCGG AACGCAGCTT GCCTACGTGT CGTTCGAGTC GCGCAAGCCC GTGGTGTACG TGCACGACGT CTCGACCGGC CGTCGCCGCC TGATCGCCAA CTTCCGCGGC TCCAACAGCG CGCCCGCCTG GTCGCCGGAC GGCCGCACGC TCGCCGTCAC CCTCAGCCGC GACGGCAGCT CGCAGCTCTA CACGATCGAC GCCAACGGCG GCGAGCCCCG CCGGCTCATG CAGAGTTCGG GCATCGACAC CGAGCCCACC TATTCCAGCG ACGGCCGCAG CATCTACTTC GTGAGCGATC GCGGCGGCGC CCCGCAGATC TACCGCGTGC CCGCCACGGG GGGAAGCGCC GAGCGCGTCA CCTTCACGGG CACCTACAAC ATTTCTCCGA GCATCAGCCC CGATGGCAAG TGGTTGGCCT ACATCTCCCG TGTGGGAGGG GCTTTCAAAC TCCACGTCAT GGATCTGACG TCCGGCAGCG TGACCGCCAT CACCGACACC ACCGCCGATG AGAGCCCGAG CTTCGCGCCC AATGGCAGAC TCATCGTCTA TGCGACCCAG CAGCAGGGCC GCGAAGCGCT GATGACCACC ACGCTGGACG GCAAGATCAA GGCCCGTCTG GCGGGGCAGA ATGGCGATAT CCGGGAGCCG GACTGGGGTC CGTTCCAGAA ACAATAA
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Protein sequence | MTSDRPSHPL AAALPHATRR HAIVALASAA SFPAFAQFRV EITGVGLTQL PTAIAPFRGE AGAPQKISAI VQADLERSGQ FRAVDASGPQ LDENSRPDVA LWKQKGADSL TTGSITRLPD GRYDVRFRLW ETVRGEDKGG QSFVVTQADL RLVAHRIADY VYEKLTGQRG IFSTRIAYVT KAGSRYSLWV ADADGENAQS ALSSPEPIIS PAWSPSGTQL AYVSFESRKP VVYVHDVSTG RRRLIANFRG SNSAPAWSPD GRTLAVTLSR DGSSQLYTID ANGGEPRRLM QSSGIDTEPT YSSDGRSIYF VSDRGGAPQI YRVPATGGSA ERVTFTGTYN ISPSISPDGK WLAYISRVGG AFKLHVMDLT SGSVTAITDT TADESPSFAP NGRLIVYATQ QQGREALMTT TLDGKIKARL AGQNGDIREP DWGPFQKQ
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