| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3376 |
|---|
| Symbol | |
|---|
| ID | 4666744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 3729662 |
|---|
| End bp | 3730201 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639824572 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_971708 |
|---|
| Protein GI | 120612030 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.891873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACA TCGCGCCGCA CCTGCCGGGC CTGCGGCGCT ACGCGCGGGC GCTGACGGGC
AATGCCTGGG CGGCGGACGA TCTGGTACAG GACACGCTCG AACGCGCCTG CCGGAAATGG
CTGCTGTGGC GCCCGGGCAG CGACCTGCGC GCATGGCTGT TCACGCTCAT GCATCGGGTG
TACCTGAACC AGTTGCGCGC GATGCCGGCG CAGCCCCCGC TGGATCTGGA AACGGTACAG
GACCACCTGC AGGCGCCGCC CGCGCGCACG GACGAGGCGC TGGACCTGGA CCGCTGCCTG
CAGCGCCTGC CTGCCGACCA GCGCGCGGTG CTGCTGCTGG TGACGCTCGA AGACATGGAT
TACGCCGCCG CCGCGAAGGT GCTGGACGTG CCGGTGGGCA CGGTGATGTC ACGGCTTTCG
CGCGCCCGGC AGCGGCTGCG CGAACTGATG GAACCGCAGG CCCGCGCACC CGGCGCGGCG
CCGGAGACAC GGCAGCCGCC TTCCCCGCCT GGAGCGCCGC GGCTGCGGCG GCTGAAATGA
|
|---|
| Protein sequence | MDDIAPHLPG LRRYARALTG NAWAADDLVQ DTLERACRKW LLWRPGSDLR AWLFTLMHRV
YLNQLRAMPA QPPLDLETVQ DHLQAPPART DEALDLDRCL QRLPADQRAV LLLVTLEDMD
YAAAAKVLDV PVGTVMSRLS RARQRLRELM EPQARAPGAA PETRQPPSPP GAPRLRRLK
|
|---|
| |