| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2867 |
|---|
| Symbol | |
|---|
| ID | 4665245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 3158278 |
|---|
| End bp | 3159036 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639824067 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_971209 |
|---|
| Protein GI | 120611531 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.488823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTC AGGGCAAGGT TTTCATCGTC ACCGGCGGCG CATCGGGCCT GGGCGAAGGC
ACGGCGCGCA TGCTCGCCGC CGCGGGCGGG CGCGTGGTCA TCGCGGACAT GCAGGCGGAC
AAGGGCGAAG CCGTGGCGCG CGATATCGGC GGCACCTTCG TGCGCTGCGA CGTGACGAGC
GAGGCCGACG GCCAGGCGGT GGTGGCGCAG GCCGTCGCGC AAGGCAAGCT GATGGGCCTG
GTCAACTGCG CCGGCATCGC CCCCGCCGAG AAGACCGTGG GCAAGAACGG CGCCCATGGG
CTGGCGCTGT TCGCCAAGAC GGTGACGGTG AACCTGATCG GCAGTTTCAA CATGATCCGC
CTCGCGGCCG AGGCCATGGC CCGCAACGAG CCCGAGCCCA CCGGCGAGCG CGGCGTGCTG
ATTTCCACGG CCAGCGTGGC GGCCTATGAC GGCCAGATCG GCCAGGCGGC CTATTCCGCG
TCGAAGGGCG GCATCGTGGG GATGACGCTG CCCATCGCGC GCGACCTGGC GCGCAACGGC
ATCCGCAACA TGACGATCGC GCCCGGCATC TTCGGCACGC CGATGCTGTT CGGCATGCCG
CAGGAGGTGC AGGACGCGCT GGCGGCGGGG GTGCCCTTCC CGAGCCGCCT CGGCACGCCG
GAAGACTATG CCCGCCTGGC CCGCCACATC TTCGAGAACG ACATGCTCAA CGGCGAGGTG
ATCCGGCTGG ACGGCGCCAT CCGGCTCGCA CCGCGCTGA
|
|---|
| Protein sequence | MDIQGKVFIV TGGASGLGEG TARMLAAAGG RVVIADMQAD KGEAVARDIG GTFVRCDVTS
EADGQAVVAQ AVAQGKLMGL VNCAGIAPAE KTVGKNGAHG LALFAKTVTV NLIGSFNMIR
LAAEAMARNE PEPTGERGVL ISTASVAAYD GQIGQAAYSA SKGGIVGMTL PIARDLARNG
IRNMTIAPGI FGTPMLFGMP QEVQDALAAG VPFPSRLGTP EDYARLARHI FENDMLNGEV
IRLDGAIRLA PR
|
|---|
| |