| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2840 |
|---|
| Symbol | |
|---|
| ID | 4667428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 3122884 |
|---|
| End bp | 3125400 |
|---|
| Gene Length | 2517 bp |
|---|
| Protein Length | 838 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639824039 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_971182 |
|---|
| Protein GI | 120611504 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.363054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGTC GAGTCACCAT TCAAACCCCG CTGGGCGATG CGCTGCACTT CCGGGAGCTC
AAGGGCCGGG AGGAACTGAG CCAGGTCTTC AGCCTCGACA TCGACCTGCT GAGCGAGGAC
AAAAGCATCG ACCCGAAGGC GCTTCTGGGC AAGAGCGCGA CGGTGGTGGT GGAGACCGAA
GGCGGTGGCC GGCGCTACCT CGACGGGATC GTGACGCGCT TCGGCATGCA GGGGCAGGAC
CACCGCTTCT ACGCCTACCG ACTGCGGCTG CAGCCTTGGG TTTGGCTGGC CTCGCGCAAG
AGCGATTTCC GGATATTCCA GAACAAGAGC GTGCCGCAGA TCATCGAAGA GGTGCTGGGC
GCGTACGGAT ATCCGATGGA AAAGAAACTC AGCCGCAGCT ACCGCACATG GGAATACTGC
GTGCAATATG ACGAGAGCGA CCTGCAGTTC GTCTCGCGGC TGATGGAGCA CGAGGGCATC
TATTACTACC ACCAGCATGC GCAGGGCCAG CACACGCTGA CGCTGGCCGA CGACATCGTG
GCCTCGCACC AGCCACTGCC CGGGGCGGCC ACGATTCCGT TCTATCCGCC CGAGAAATCG
GCGGTGGCCG ACCGCGAGAA CATCCACGCC TGGGAGCTGC ACGAGGAGAT CCACTCGGGC
CGCTTCTACA ACGACGACTA CGACTTCAAG AAGCCCAAGG CGGACCTGGC GAACATGCGG
CAGATGCCGC CGGGGCACAG CCACGATGCG TACGAGACGT ACGAGTGGCC CGGGGGCTAC
ACGGAGTTCG GCGACGGCGA GGCCTATGCA CGGGTGCGGC TGCAGGAGAA CCTGAGCGGG
CGCAGCACGG TGCGCGGCGA GTCGCGCCAC CGGTCCCTGG CCACGGGCTA CCTCTTCACG
CTGGAGAACT ACCCGCGCGC AGACCAGAAC CAGCAATACC TGATCACCGG CCTGCAGTAC
CACTTCAAGG AGAACCCGCG GGTGAGCGCG GCGAACCCGG GGCAGAAGGG CACCGTGCAG
GAAGAAGGCT CGTTCCAGCG CTTCACGCTG CAGGCGCAGC CCACGAGCCT GCCGTACACG
CCGGCACGGG TGACGCCCAA GCCGAAGACC ACGGGGCCGC AGACCGCGGT GGTGGTGGGC
CCGCCGGGCG AGGAGATCTG GCCGGACCAG TACGGGCGGG TGAAGGTGCA GTTCCACTGG
GACCGGCAGG GCAGGTTCGA CGAGCAGTCC AGCTGCTGGA TCCGTGTGTC GCAGGGCTGG
GCAGGGCAGA ACTACGGCAG CATCTACCTG CCGCGCATCG GGCAGGAAGT CATCGTGGAC
TTCTTGTCCG GAGACCCGGA CCAGCCGATC ATCACGGGGC GGGTGTACAA CGCGGACCAG
ATGCCGCCGT GGAAGCTGCC GGAGCACAAG ACGCAGTCGG GCACGCTCAC GCGCTGGAGC
AAGGGTGGGG GCGGGGCGAG CATGCTGCGC TTCGAGGACC AGAAGGGGAT AGAGCACCTG
GAGCTGTCGA ACACGTACGG CAACACGTAC CTGAACATGG GGTACCTGAT GCACCAGGGC
ACGGGGTCGC AGCGGGGGTA TGGCTTCGAG CTGCGCACGG ACCTGTGGGG ATCGATCCGC
GCGGACAAGG GCCTGCTCAT CACCACGTAC AACCAGGATT TCACCTCCCG CGTCTCGGTG
AACAACCCGG ACGGTTTCGA GCACATGGGA GCGACGCTGG CCAACACCGC TTCGCTCATG
CAGGAAGCCG GGCAGGCGGT TTCCTCGGCG CAGTCCACCA TCGGTACGCT CAATGCGGCG
AAATCCTCGC AGATCTCCAG CCTGGGATCG GCCATCGCCG CGATCACGGG CGGCGGTGCG
GGAGGCGCGG CCTCGCTCGC CAAGATGGCC TCGGCGCTCT CGGGTGATGG CGGCGGCGCG
GAAACCGCCA TGCCCACCGA CACCGACCCC GCCATGGCCG ATGCGCGCAG CCTGATGGAC
CTGTCACGGG ACATCACCAA GCCGGTGGTC TCTATCGTGA GCCCGGAGGG CCAGAGCCTC
ATCAGCCCCA AGCCGATCGT GGTCAGCTCC GGCCAGAGCA CCTCGGTGCG CGCGCAGCAG
CACGTGACCG TATCGAGCGG TGCGCAGCTC ACGCAGCTGG CCAAAAGCGG CATGCTCACC
CATGTCACCG AAGGCGGGCA GACCAATATC GTCTCGGCCG GCGACGTGGC CTCCGTCGCC
AAGACCGGCC ACATGAACCT CGTGGCGGAG CAGAACATCA CCGTGTCGTC CACGGCGCTC
AATGCCCACC TGCTGGCCAA GGAAAACGCC GTGGTCAACG CGGAAACCGA CACGGTTTTC
GTCAGTGCGG GCAAGCACAT CACCGAGGTG GCCGGCGAGA GCATCACGCT GGTGTGCGGC
AAGGCTTCCA TCACCCTCAA AGCCGACGGC ACCATCGTGC TCAACGGCGT GAAAGGCGTC
TTCAATTTCG AGGACGACCT CGACCAGTTC GGCAAGAAGA TCAACCTGAA TTGCTGA
|
|---|
| Protein sequence | MTRRVTIQTP LGDALHFREL KGREELSQVF SLDIDLLSED KSIDPKALLG KSATVVVETE
GGGRRYLDGI VTRFGMQGQD HRFYAYRLRL QPWVWLASRK SDFRIFQNKS VPQIIEEVLG
AYGYPMEKKL SRSYRTWEYC VQYDESDLQF VSRLMEHEGI YYYHQHAQGQ HTLTLADDIV
ASHQPLPGAA TIPFYPPEKS AVADRENIHA WELHEEIHSG RFYNDDYDFK KPKADLANMR
QMPPGHSHDA YETYEWPGGY TEFGDGEAYA RVRLQENLSG RSTVRGESRH RSLATGYLFT
LENYPRADQN QQYLITGLQY HFKENPRVSA ANPGQKGTVQ EEGSFQRFTL QAQPTSLPYT
PARVTPKPKT TGPQTAVVVG PPGEEIWPDQ YGRVKVQFHW DRQGRFDEQS SCWIRVSQGW
AGQNYGSIYL PRIGQEVIVD FLSGDPDQPI ITGRVYNADQ MPPWKLPEHK TQSGTLTRWS
KGGGGASMLR FEDQKGIEHL ELSNTYGNTY LNMGYLMHQG TGSQRGYGFE LRTDLWGSIR
ADKGLLITTY NQDFTSRVSV NNPDGFEHMG ATLANTASLM QEAGQAVSSA QSTIGTLNAA
KSSQISSLGS AIAAITGGGA GGAASLAKMA SALSGDGGGA ETAMPTDTDP AMADARSLMD
LSRDITKPVV SIVSPEGQSL ISPKPIVVSS GQSTSVRAQQ HVTVSSGAQL TQLAKSGMLT
HVTEGGQTNI VSAGDVASVA KTGHMNLVAE QNITVSSTAL NAHLLAKENA VVNAETDTVF
VSAGKHITEV AGESITLVCG KASITLKADG TIVLNGVKGV FNFEDDLDQF GKKINLNC
|
|---|
| |