| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2566 |
|---|
| Symbol | |
|---|
| ID | 4665505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2816931 |
|---|
| End bp | 2817557 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639823770 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_970913 |
|---|
| Protein GI | 120611235 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.11709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00204386 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGCTGTCGA TCATACAAGC CGCAGGCTGG CCGATCTGGC CCCTGATAGC CTGCTCCATC
CTGGCGCTGG CACTGGTGGC GGAGCGCTTC GCCACCCTGA AAACCACCAA GGTCGTCCCC
CCCAAACTGC TGGACGAGGC CATCTCCGTT TCCTCGCGCG GATTGCCCAC GCCGGACGTC
GTCAACCAAC TGGCGCAGAA CTCCGCCCTC GGCGAGGTGC TGGCCAGCGG ACTGCGCACG
CTCAACAGCC ATCCCCAGAG CAGCGAGGCG GACGTCCGCG CCGCGATGGA GGGAACGGGC
CGTGCCGTCG CCCAGCGGCT CGAGAAGTAC CTCAACGCCC TGGCGACCAT CGCCTCGGCC
GCCCCGCTGC TGGGCCTGCT CGGCACGGTG ATCGGCATGA TCGAGATCTT CGGCTCGCAG
GGATCGTCCG CCACGGGCCA GGGCAACCCG GCCCAGCTGG CGCACGGGAT CTCCATCGCG
CTCTACAACA CGGCCTTCGG CCTGATCGTC GCCATCCCGA CGCTGATCTT CTGGCGGTAT
TTCCGCAGCC GCGTGGACGC CTACCTGCTC ACGCTGGAGC TCGCCTCCGA GCAGTTCGTC
CGCCACCTCC TGCGCCTGCG CAAGTGA
|
|---|
| Protein sequence | MLSIIQAAGW PIWPLIACSI LALALVAERF ATLKTTKVVP PKLLDEAISV SSRGLPTPDV
VNQLAQNSAL GEVLASGLRT LNSHPQSSEA DVRAAMEGTG RAVAQRLEKY LNALATIASA
APLLGLLGTV IGMIEIFGSQ GSSATGQGNP AQLAHGISIA LYNTAFGLIV AIPTLIFWRY
FRSRVDAYLL TLELASEQFV RHLLRLRK
|
|---|
| |