| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2015 |
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| Symbol | |
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| ID | 4668773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 2190440 |
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| End bp | 2192308 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639823226 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_970373 |
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| Protein GI | 120610695 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0928222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00382162 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCACGA ATTCCTTCCC TCTCCTGCAG ACCGTGAACG ACCCGGCCGA CCTGCGCCGC
ATGTCGCGCG CCCAGCTGAA AGAGCTGGCC GCGGAGTTGC GCGCATTCGT GCTGGACAGC
GTGTCCAAGA CGGGAGGGCA CCTCAGTTCC AACCTGGGAA CGGTGGAACT CACGGTGGCG
CTGCACACCG TGTTCGACAC GCCGCGCGAC CGCCTCGTGT GGGATGTGGG CCACCAGACC
TATCCGCACA AGATCCTCAC CGGCCGGCGC GACCGCATGC CCACGCTGCG CCAGCTGGGC
GGCCTCTCGG GCTTTCCCCA GCGCACGGAA AGCGAGTACG ACACCTTCGG CACGGCCCAC
TCCAGCACCA GCATTTCCGC GGCGCTCGGC ATGGCCATGG CCGCCCGCCA GCGCGGCGAG
GACCGCCGCG CCGTGGCCAT CATCGGCGAC GGCGCGATGA CGGCCGGCAT GGCCTTCGAG
GCGCTGAACA ATGCCGGCGT GGCCGACGCC AACCTGCTCG TCATCCTGAA TGACAACGAC
ATGAGCATCA GCCCGCCCGT GGGGGCGCTC AACCGCTACC TGGCACAGCT CATGAGCGGG
CAGTTCTACG CGGCCGCGAA GAACGTCGGC AAGACGGTGC TCGGGCCCGT GCCGCCACTG
CTCGAACTCG CCAAGCGCTT CGAGCAGCAG GCCAAGGGCA TGGTGTTGCC GGCCACGCTG
TTCGAGAAGT TCGGTTTCAA CTACATCGGC CCTATCGACG GGCACGACCT CGATTCGCTC
ATTCCCACGC TGGAGAACAT CAAGGGCCTG AAGGGCCCGC AGTTCCTGCA CGTGGTCACG
AAGAAGGGGC AGGGCTACAA GCTGGCCGAG GCAGATCCCG TGGCTTACCA CGGCCCTGGC
AAGTTCGACC CGAGCGTGGG CCTGACCAAG CCCGCCACGC CGCCGAAGCA GACCTTCACG
CAGGTGTTCG GGCAGTGGCT CTGCGACATG GCCGCGCAGG ACGACCGGCT CGTGGGCATC
ACGCCGGCCA TGCGCGAGGG CTCGGGCATG GTGGAGTTCG AGAAGCGCTT CCCCGGCCGC
TACTACGACG TGGGCATCGC CGAGCAGCAT GCCGTGACCT TCGCCGCGGG CATGGCCTGC
GAGGGCGTGA AGCCGGTGGT GGCGATCTAC TCCACCTTCC TGCAGCGCGC CTACGACCAG
CTCATCCACG ACGTGGCGCT GCAGAACCTG CCGGTGGTGT TCGCGCTGGA CCGCGCAGGC
CTCGTCGGTG CCGACGGCGC CACGCACGCG GGTGCCTACG ACATCCCCTT CGTGCGCTGC
ATCCCGAACA TGAGCATCGC CTGTCCGGCG GATGAGCGCG AGTGCCGGCA GCTGCTGTCC
ACCGCCTACG CACAGGACCA TCCCGTGGCC GTGCGCTATC CGCGCGGCAG CGGCGCGGGC
GTGGCACCCC TGCCGGGGCT GGAGGGGCTT CCCTTCGGCA AGGGCGAGGT GCGCCGCACC
GGGCAACGCA TCGCGATCCT GGCATTCGGC ACGCTGCTCT ATCCCGCGCT GCAGGCCGGC
GAGACGCTGG ACGCCACGGT GGCCAACATG CGCTGGGCCA AGCCGCTGGA TACCGCATTG
CTGCTGGAGA TCGCGGCCGG GCACGACGCC CTGGTGACGG TGGAAGAGGG CGCCGTGCTG
GGCGGTGCGG GCAGCGCCGT GTGCGAAGCG CTGAATGCCG CCGGCATCCA GAAGCCCGTG
CTGCAGCTCG GCCTGCCGGA CGTGTTCATC GAGCATGGCG ACCCGGCCCG CCTGCTCGCG
CTGCAGGGTC TCGATGCCGA GGGCCTCGTG CGCTCCATCA CGGCGCGCTT CGGTCCCGCC
GCCGGCTGA
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| Protein sequence | MSTNSFPLLQ TVNDPADLRR MSRAQLKELA AELRAFVLDS VSKTGGHLSS NLGTVELTVA
LHTVFDTPRD RLVWDVGHQT YPHKILTGRR DRMPTLRQLG GLSGFPQRTE SEYDTFGTAH
SSTSISAALG MAMAARQRGE DRRAVAIIGD GAMTAGMAFE ALNNAGVADA NLLVILNDND
MSISPPVGAL NRYLAQLMSG QFYAAAKNVG KTVLGPVPPL LELAKRFEQQ AKGMVLPATL
FEKFGFNYIG PIDGHDLDSL IPTLENIKGL KGPQFLHVVT KKGQGYKLAE ADPVAYHGPG
KFDPSVGLTK PATPPKQTFT QVFGQWLCDM AAQDDRLVGI TPAMREGSGM VEFEKRFPGR
YYDVGIAEQH AVTFAAGMAC EGVKPVVAIY STFLQRAYDQ LIHDVALQNL PVVFALDRAG
LVGADGATHA GAYDIPFVRC IPNMSIACPA DERECRQLLS TAYAQDHPVA VRYPRGSGAG
VAPLPGLEGL PFGKGEVRRT GQRIAILAFG TLLYPALQAG ETLDATVANM RWAKPLDTAL
LLEIAAGHDA LVTVEEGAVL GGAGSAVCEA LNAAGIQKPV LQLGLPDVFI EHGDPARLLA
LQGLDAEGLV RSITARFGPA AG
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