Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_1886 |
Symbol | trmD |
ID | 4669343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | + |
Start bp | 2042193 |
End bp | 2042960 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 639823095 |
Product | tRNA (guanine-N(1)-)-methyltransferase |
Protein accession | YP_970244 |
Protein GI | 120610566 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000334711 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTTCG ACGTCATCAC GCTGTTCCCG GAGCTGTTCA CGCCGTTTCT CGCCAGCGGC GTGACGCGAC GGGCCTATGC CACCGGGCTC GTGGACGTGC GCTTCTGGAA CCCGCGCGAC TACGCGGAGG GCAACTACCG CCGCGTGGAC GACCGCCCCT TCGGCGGAGG GCCGGGCATG GTCATGATGG CCGAGCCGCT CGAGCGCTGC CTGCGGGCCA TCCGCGCGGA CCGCGGCGAG GCGCCCGAGG CCGTGGCGCC ACTGGTGATG TTCTCGCCGA TCGGGCGCAG GCTGGACCAT GACGGCGTGG CGGGCTGGGC CGCCGGCAAC GGCGCAGTGC TGCTGTGCGG CCGCTACGAG GGCGTGGACC AGCGGTTCGT CGATGCCCAT GTGGACGTGC AGCTGAGCCT GGGGGATTTC GTCCTCTCCG GCGGCGAGAT CCCCGCCATG GCGCTGCTCG ACGCGGTGGC GCGGCTGCAG CCCGGCGTGC TGAACGATGC CGGCAGCCAC CAGGAAGACA GCTTCAATGC AGCGCTGGAC GGCCTGCTGG ACTGTCCGCA CTACACCCGT CCGGAGTCGT GGCAGGGGCA GGCGGTGCCC GCCGCGCTGC TGTCCGGCCA CCATGCGCAG ATCGAGCGCT GGCGGCGCGA CCAGCGGCTT GCCGTGACGG CGCGGCACCG GCCGGACCTG GTCGAGGCCG CGCGCGTGGC GGGGCGCCTC GACCGCGCGG ATGAAGCCGT CTTGGCGAAA CTGAACGGCT TGCTATAA
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Protein sequence | MRFDVITLFP ELFTPFLASG VTRRAYATGL VDVRFWNPRD YAEGNYRRVD DRPFGGGPGM VMMAEPLERC LRAIRADRGE APEAVAPLVM FSPIGRRLDH DGVAGWAAGN GAVLLCGRYE GVDQRFVDAH VDVQLSLGDF VLSGGEIPAM ALLDAVARLQ PGVLNDAGSH QEDSFNAALD GLLDCPHYTR PESWQGQAVP AALLSGHHAQ IERWRRDQRL AVTARHRPDL VEAARVAGRL DRADEAVLAK LNGLL
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