| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1563 |
|---|
| Symbol | |
|---|
| ID | 4666505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1729326 |
|---|
| End bp | 1730522 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639822765 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_969926 |
|---|
| Protein GI | 120610248 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.850295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTCG CAGACCGCCT GAACAACGTC GAAACCTCCG CCATCCGGGA GCTGTTCAAG
CTGCTGGGCA AGCCCGGCAT CATCAGCTTC GCCGGCGGCT TTCCCGACAG CGCGATGTTC
GACGTCGAGG GCATCCGCGA GGCGAGCGGG CGGGCGCTCG CCGAGGAGCC CGGCACGGCG
CTGCAGTACG GTGCCACCGA GGGCTACAAC CCGCTGCGCG AACAGCTCTC GGCCTTCATG
GCCTCCAAGG GCGCGCAGGG CGTGCGGCCC GAGGACCTGA TCGTCACCAC CGGCAGCCAG
CAGGCGCTGG ACCTGCTGGG CAAGACCCTC ATCAGCCCCG GCGACAAGGT GATCGTGGAA
GGGCCCACCT TCCTCGCCAC CATCCAGTGC TTCCGCCTCT ACGGCGCCGA ACTGGTAAGC
GCACCCGTGG ACGGCCATGG TGTGGATGCC GACGCGCTCG AGCGGCTCAT CGTGGAGCAC
CGGCCCAAGT TCGTCTATCT CATTCCCACG TTCGGCAACC CCAGCGGCGC GCTGCTGTCG
CTGGAGCGCC GCCGCCGGAT CCTGGAACTG GCGGTGCGCC ACCAGGTGCT GGTCGTCGAG
GACGATCCCT ACGGCGACCT GTATTTCGGC GAGGCGCCGC CGCCCAGCCT GCTGGCGCTG
TCGGCCACGG TGCCCGGCAG CCGCGAACTG CTGGCCCACT GCGGCAGCCT CAGCAAGGTG
CTGAGCCCGG GCCTGCGCGT GGGCTGGCTG ATCGCGCCCG CCGAGCTGCT GGCCAAGGCC
ACCATGTGCA AGCAGTTCAG CGACGCGCAC ACCAGCACTT TCGCGCAGGC CACGGCCGCG
CAGTACCTGC GTTCGGGCCG CATGCCGGCC ACGCTGGCCA AGGTACGCGC CGTGTATGCC
GAGCGCGCGC AGGCCATGGG CGACACGCTG CGCCGCGAGC TGGGCGAGGC GATCGACTTC
GTGCAGCCCC AGGGCGGCCT GTTCGTGTGG GCGCGGCTCA CGGGGGCGGG CGGCGCGGTG
GCCGACGGCA ACGTGCTGGC CAAGCTGGCC ATCGACAAAG GCGTGGCCTT CGTGCCGGGA
ACGCCGTTCT TCTGCGCGAA CCCCGACCAT GCCACGCTGC GCCTGTCGTT CGCGACGGCC
GACGTGGACA GGATCCGCGA AGGCGTGGCG CGCCTCGGCC AGGCGCTGCG AGGCTGA
|
|---|
| Protein sequence | MQFADRLNNV ETSAIRELFK LLGKPGIISF AGGFPDSAMF DVEGIREASG RALAEEPGTA
LQYGATEGYN PLREQLSAFM ASKGAQGVRP EDLIVTTGSQ QALDLLGKTL ISPGDKVIVE
GPTFLATIQC FRLYGAELVS APVDGHGVDA DALERLIVEH RPKFVYLIPT FGNPSGALLS
LERRRRILEL AVRHQVLVVE DDPYGDLYFG EAPPPSLLAL SATVPGSREL LAHCGSLSKV
LSPGLRVGWL IAPAELLAKA TMCKQFSDAH TSTFAQATAA QYLRSGRMPA TLAKVRAVYA
ERAQAMGDTL RRELGEAIDF VQPQGGLFVW ARLTGAGGAV ADGNVLAKLA IDKGVAFVPG
TPFFCANPDH ATLRLSFATA DVDRIREGVA RLGQALRG
|
|---|
| |