| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0916 |
|---|
| Symbol | |
|---|
| ID | 4667003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 997913 |
|---|
| End bp | 999274 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639822116 |
|---|
| Product | general secretory pathway protein E |
|---|
| Protein accession | YP_969288 |
|---|
| Protein GI | 120609610 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.346946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCACC CGCTTCCCTA CGCCTTCGCG CGCAGTTCGC AACTGCTGCT GGAGGACGAC
GGCCACACCT GCGTGCTCTG GCACGGCCCC GCACCGGATG CCGGGGCACT GTCCGAGGTC
ATGCGCAAGC ATGCCGTGCG GGAGCTGATG CCGCTGGACG CGCACGCCAT CGCGCAGCGC
ATCAGCGCGG CCTATTCCCA AGGGGAATCC AGCGCGGCGA CGGTGGTGAG CGAGGTCGAA
TCCGACGCCG ACCTCTCGCG CATGATGCAG GAGCTGCCGG CCGTGGAGGA CCTGCTGGAA
TCGGCGGGCG ACGCGCCCAT CATCCGCATG CTCAACGCCC TGCTCACGCA GGCCGCGCGC
GACGGCGCGA GCGACATCCA CATCGAGCCC TACGAGCGGC ATTCGAGCGT GCGCTTCCGC
GTGGACGGCA CGCTGCGCGA AGTGGTGCAG CCGAACCGCG CGCTGCATGC GGCGCTGATC
TCCCGCCTGA AGATCATGGC GGACCTGGAC ATCTCCGAAA AGCGCCTGCC CCAGGACGGC
CGCATCAGCC TGCGGCTGGG CACGCGCGCG ATCGACGTGC GCGTCTCGAC CCTGCCGAGC
GCCCATGGCG AGCGGGCGGT GCTGCGCCTG CTGGACAAGA GCGAGAGCAA GCTGAGCCTG
GAGGCCGTGG GCATGCAGGG CGACACGCTG CGCCGCTTCG ACGGGCTGAT CCACCAGCCG
CATGGCATCG TGCTCGTGAC AGGGCCCACG GGCTCGGGCA AGACCACCAC GCTGTATGCG
GCGCTGGGCC GGCTCGACGC CACCAGCAGC AACATCATGA CGGTGGAGGA CCCGATCGAG
TACGAACTGC CGGGCGTGGG CCAGACCCAG GTCAACAGCA AGATCGACCT CACCTTCGCC
AAGGCGCTGC GCGCCATCCT GCGCCAGGAC CCGGACGTGA TCATGATCGG CGAGATCCGC
GATTTCGAGA CCGCGCAGAT CGCCATCCAG GCCTCGCTGA CGGGCCACCT GGTGCTGGCC
ACGCTGCACA CCAACGACGC GGCCAGCGCC GTCACCCGCC TGACCGACAT GGGCGTGGAG
CCGTTCCTGC TCTCCAGCTC CCTGCTGGGC GTGCTGGCGC AGCGGCTGGT GCGCAAGCTC
GATCCGACCG AGCCCAGTGG CTACCGCGGC CGCACGGGCG TGTTCGAGCT CCTGGTGGTG
GACGACACGC TGCGCGCGCA GATCCACGGC CAGGCGGCCG AGGCGGAACT GCGCGCCACC
GCGATCGCCG GCGGCATGAC GCTCATGCGC GAGGACGGTG AGCGGCTGGT GCGTGCCGGC
ATCACGAGCC CCGAGGAAGT GCTGCGCGTC ACGCGCGAAT AG
|
|---|
| Protein sequence | MRHPLPYAFA RSSQLLLEDD GHTCVLWHGP APDAGALSEV MRKHAVRELM PLDAHAIAQR
ISAAYSQGES SAATVVSEVE SDADLSRMMQ ELPAVEDLLE SAGDAPIIRM LNALLTQAAR
DGASDIHIEP YERHSSVRFR VDGTLREVVQ PNRALHAALI SRLKIMADLD ISEKRLPQDG
RISLRLGTRA IDVRVSTLPS AHGERAVLRL LDKSESKLSL EAVGMQGDTL RRFDGLIHQP
HGIVLVTGPT GSGKTTTLYA ALGRLDATSS NIMTVEDPIE YELPGVGQTQ VNSKIDLTFA
KALRAILRQD PDVIMIGEIR DFETAQIAIQ ASLTGHLVLA TLHTNDAASA VTRLTDMGVE
PFLLSSSLLG VLAQRLVRKL DPTEPSGYRG RTGVFELLVV DDTLRAQIHG QAAEAELRAT
AIAGGMTLMR EDGERLVRAG ITSPEEVLRV TRE
|
|---|
| |