Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_0344 |
Symbol | rpsC |
ID | 4667412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | + |
Start bp | 373557 |
End bp | 374438 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639821550 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_968725 |
Protein GI | 120609047 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.212701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000331478 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGGACAGA AAATCCATCC TACCGGCTTC CGCCTGGCCG TGAGCCGCAA CTGGGCCAGC CGCTGGTACG CGAACAACCG TGACTTCGCC GGCATGCTGG CCGAAGACAT CAAGGTGCGC GAGTACCTGA AGGCCAAGCT CAAGAACGCC GCCGTGTCGC GCATCCTGAT CGAGCGTCCT GCCAAGAACG CCCGCATCAC GATCTATTCG GCACGCCCCG GCGTAGTGAT CGGCAAGAAG GGCGAGGACA TCGAGAACCT GAAGAAGGAA CTCGCCTCCC GCCTGGGCGT GCCGGTCGCA GTGAACATCG AGGAAGTGCG CAAGCCCGAA ATCGATGCCA AGCTGATCGC CGACTCGATC ACCCAGCAGC TCGAAAAGCG CATCATGTTC CGCCGCGCCA TGAAGCGTGC GATGCAGAAC GCGATGCGCC TGGGCGCCCA GGGCATCAAG ATCATGTCGT CTGGTCGCCT GAACGGCATC GAAATCGCCC GTACCGAGTG GTACCGCGAA GGCCGTGTGC CGCTGCACAC CCTGCGCGCC GACATCGACT ACGGCACTTC CGAAGCGTTC ACCACCTATG GGGTGATCGG TCTGAAGGTG TGGGTCTACA AGGGCGATAC GCTGGGCCGC AACGACCTGC CGGCGGTCGA GACGCCCCGT CCGGAAGAAG AGCGCCGCCC CCGCGGTCCC CGCCGTGACG GCCGCCCTGG TGGCGACCGT GCCGGTGCAG GCCGTGGTCC CCGTCGTCCC ATGGGTGGCA ATGCCGCTCC GGCCGATGGC AGCGACAAGC CCGCTGGTGC CGGTGGCACC GACGCAACCG CCGTTAAGCG CGTTCGCAAG GTTGACGCGC CCGCTACAGC AGCGGACGGC AAAGGAGAAT AA
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Protein sequence | MGQKIHPTGF RLAVSRNWAS RWYANNRDFA GMLAEDIKVR EYLKAKLKNA AVSRILIERP AKNARITIYS ARPGVVIGKK GEDIENLKKE LASRLGVPVA VNIEEVRKPE IDAKLIADSI TQQLEKRIMF RRAMKRAMQN AMRLGAQGIK IMSSGRLNGI EIARTEWYRE GRVPLHTLRA DIDYGTSEAF TTYGVIGLKV WVYKGDTLGR NDLPAVETPR PEEERRPRGP RRDGRPGGDR AGAGRGPRRP MGGNAAPADG SDKPAGAGGT DATAVKRVRK VDAPATAADG KGE
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