Gene Aaci_1780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAaci_1780 
Symbol 
ID8425295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 
KingdomBacteria 
Replicon accessionNC_013205 
Strand- 
Start bp1837046 
End bp1837546 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content67% 
IMG OID645027890 
ProductNusB antitermination factor 
Protein accessionYP_003185181 
Protein GI258511747 
COG category[K] Transcription 
COG ID[COG0781] Transcription termination factor 
TIGRFAM ID[TIGR01951] transcription antitermination factor NusB 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.97176 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACCCGAC ATGAAGCGAG AGAGTGCGCG CTGCAGGCGC TGTGCGTGCT CGACGTCCAG 
CGCGATCTCG GCTCGGCGGA AGCGATAGCC TCCGCGTTGG CCGAACGCGG CACGGATGCC 
GGGGGAGACT TCACGTACAT CGAGGAACTC GTCGATGGCA CGCGCCGGCA TCTGGACGAG 
ATCGACGAGT TGCTTGCCCG GCACATGGAG CGCTGGTCGC CTGAACGCAT CGGGCGCGTC 
GAGCGGAACG TTTTGCGCCT CGCCACTTAC GAACTGCTGT TCGAGCCGGA ACTGCCCATT 
GCCAGCGCCA TCGACGAGGC CGTGGAGATT GCCAAAACGT TCGCCACGGA GCAATCCGGT 
CGCTTCGTGA ACGGTGTGCT CGCGAAGCTT TTGCCCGCCG TGGCGGATCG GCGACGTGCG 
GATACGCGCG AGGCGGGGCA GGAGAAGCGG ACAGCAAGCG CGGCCGAACC GGCGCGGGAG 
GGCGTCGACG ATGGCGCGTG A
 
Protein sequence
MTRHEARECA LQALCVLDVQ RDLGSAEAIA SALAERGTDA GGDFTYIEEL VDGTRRHLDE 
IDELLARHME RWSPERIGRV ERNVLRLATY ELLFEPELPI ASAIDEAVEI AKTFATEQSG 
RFVNGVLAKL LPAVADRRRA DTREAGQEKR TASAAEPARE GVDDGA