Gene Aaci_1534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAaci_1534 
Symbol 
ID8425045 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 
KingdomBacteria 
Replicon accessionNC_013205 
Strand
Start bp1590030 
End bp1591679 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content59% 
IMG OID645027643 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003184939 
Protein GI258511505 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGTTG CTCAACTGGT CGAGGCATGT CGCCAAGGCT TGCCAGAGTC TTGGAACACG 
CTTGTCTCCA TGTTCCGCCC ACAGGCGCTA GGCTGGGTCA CGCAGTTTTG CCGGGATCGA
GATTTGGCGG AAGACGTTGT GCAGGAGAGC TGGCTGACCG CAGCACGTCA CCTGTCCGAG
TTACGGAATC CACAGGCGTT TCCGCGTTGG TTCTTTCAGA TTGTGAAAAC GCAGGCGTAT
CGCACGTTGA TGCAAGCGTA CAGGGAGCAG GTCGAGGAGA TGAAGGAGGT GGCGTCGGAT
GTAGACCAAG AACGGAGTAC CGTCCTGAAA CTGGATTTGG AACGAGCGCT GGACAGCCTG
CCGCTGGAAT TGAAACAGGT ATTTATTCTG GCAGGCATAT ACCAATGGCC CATCCGGGAT
GTGGCCTCGT TCCTGAGAAT TCCGGCGGGG ACCGTTAAAT CGCGTTTGTC CAGGGCAAGG
CAGCAATTGC AAGCCGCTCT GAAGGAGGGT GGAGGTGATG CGGCCGGCCA GGAGTCTGCC
TACGAGTCAC TGTACTATGT CCTGTCTGCT TGGGGCTCCG GGGAAAAGGT CGATCATCCA
ACGGTTCGCC ACACGTTGGC CAGAGCCTGG GCCACGATGA AAAGCCTGAG GTTCACGCTC
ACCCGGGAAT GGCTTTCAGG TGAGCAGATC GGGAGAAGAC AACAAGCGCG GTATGCATGG
CGTGCGCCCA ATTGGCTGAG GATTGAAACA GAATCGCCGG ATGCCGGGCG CGTCGTCACG
GTCATTCATG GACGCCGCAT GCGGGTGCGG ATGGCAAAGA CGAACACCAT CCAGGAAGCA
CAGGTCCCGC ACGAGGCGGA TCCATCGTTC ATGTTGGGCC ATCTTTGGAA AGCGTTGCTG
ACCCGAGATG ACTTGGTGGT CATGCCGCCT GAGCAGGGCG AACGGTTATG GCACCTGTGG
GTGGAGCTCG ATCGCGACGT CACCGCCGAG GAGGATGAGG CGTGTGAGAG CGTCCACTTC
TGGATTCATC CGGAAGACGG TCTGCCGAGG CGCATCGAGT ACTGGAATGG GCGCGGGTGT
GTGTTCCGCG AGGTGATGGA GGACATCGAA TGGAACGTAG CGGTTGCCAG GCGCGAGTTT
ACCGTACCCA CGGATGGGAA GAAGTTGCGC CTGTGGACGT TGGGCGACCT CCTCGGCGGC
CTCCCGATTC GTGTTGATCC GAGCGACGCG ATACGGCAGT GTCCGTTTCC GTTGATGGGG
CTCGACCGGT CCGTCGTGAA GGAACTCGGA TTGCGCGACC ACATTGAAAT CTCCAAGTAT
TATCACGGAC GAGAGTGGGC GGTTCGATAC GGTGCACCCT CGCGTTCCAG GGCGGTGTTG
CGGGGTGAAG CCTTCATCAT CTTGTGGCAG GCAGGAGCGG TAACGGACGA CGTGCATCGT
CATTGGGGGA TCTCAGACGT CCAAGACGAG TGTCTGGAAC TCGGGACCCA GGCGAGAAGC
GGTGAAGTGA TCACGCCTCG TTTTGTGATT TCGAGACTGT ATTGGGAAAT GAACGGGAGG
CCCTATCAGC TCATGGCTGC TGGTATTTCT ATGGACCGTT TGGTGAGCCT CGTGCGTTCG
GTGAGGCCAC TGCGCGACGA CGGGAAGTGA
 
Protein sequence
MEVAQLVEAC RQGLPESWNT LVSMFRPQAL GWVTQFCRDR DLAEDVVQES WLTAARHLSE 
LRNPQAFPRW FFQIVKTQAY RTLMQAYREQ VEEMKEVASD VDQERSTVLK LDLERALDSL
PLELKQVFIL AGIYQWPIRD VASFLRIPAG TVKSRLSRAR QQLQAALKEG GGDAAGQESA
YESLYYVLSA WGSGEKVDHP TVRHTLARAW ATMKSLRFTL TREWLSGEQI GRRQQARYAW
RAPNWLRIET ESPDAGRVVT VIHGRRMRVR MAKTNTIQEA QVPHEADPSF MLGHLWKALL
TRDDLVVMPP EQGERLWHLW VELDRDVTAE EDEACESVHF WIHPEDGLPR RIEYWNGRGC
VFREVMEDIE WNVAVARREF TVPTDGKKLR LWTLGDLLGG LPIRVDPSDA IRQCPFPLMG
LDRSVVKELG LRDHIEISKY YHGREWAVRY GAPSRSRAVL RGEAFIILWQ AGAVTDDVHR
HWGISDVQDE CLELGTQARS GEVITPRFVI SRLYWEMNGR PYQLMAAGIS MDRLVSLVRS
VRPLRDDGK