Gene Aaci_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAaci_0004 
Symbol 
ID8423462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 
KingdomBacteria 
Replicon accessionNC_013205 
Strand+ 
Start bp3039 
End bp4154 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content64% 
IMG OID645026107 
ProductDNA replication and repair protein RecF 
Protein accessionYP_003183458 
Protein GI258510024 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.244423 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACATCC GCCGCGTTGA ACTCCACGAC TTTCGCAACT ATGCGAAGGC CGAGATCGAG 
TTGTCGCCAG GAGTGAACGT GCTCGTCGGC GAGAACGGCC AGGGAAAGAC GAACGCCCTG 
GAAGCGATGC TGCTCATCGC CGTGGGCAAG TCGCACAGGG CTCATCGGGA TCGCGATCTC 
ATCCGCTGGG AACAGGACCG CGCGCGCATC CTGTTGGAGG CCTCGACGCG GTACGGAGAC 
CGGCGCCTGA CGTTGGAACT GGGGCCAGAG GGGCGCAGGG CGTTCGCCAA CGGCGTTCAG 
GTGGGCCGGA TGACCGAGTT TGTCGGCCAG GTGCAGGTGG TGCTCTTTGC GCCGGAGGAC 
CTCGATCTCG TCAAGGGCAG TCCCCGCGTT CGGCGCAGGT TTCTCGACAC GGAACTGGGA 
CAGATGGAGC CCTTGTATCT CCACCACCTG AGCCTTTACA ATCGCGCGCT CTTGCAGCGA 
AACCGCTGGC TGAAGACCGC ACCGCTGTCT CCGGACGACG ACGTGCTCGC CACGTTTGAC 
CGACAGATTG CCTTTCACGG GGCGCACGTG ATTCACCGGC GCCTCCGGTT TCTCGCGCGG 
TTGCGCGCAT ACGCCGCTCG CATCTACAGC GACATCGCGA GCGGCCGGGA AGAGTTTGCG 
CTCGCGTACC GAAGTTCGGT CTCCGGCGTC GAGGAAGGCA TGAGCGTGGA GGAGATGGCA 
GACACCGTGC AACGCGCGCT CGAAAAAAAC CGGGCGCAGG ATCTGCGCTT TGGCACGACG 
AGCGCCGGCC CCCACCGGGA CGACATCCTG CTCTTTCTCG ACGGCCGGGA GGTGCACACG 
GCCGCCAGCC AGGGACAGCA GCGGACCATT GCGCTGTCGC TTCGGCTCGC CGAGATCGAT 
TTCATGCACG AGGAGCTCGG CGAGTATCCC GTGCTGCTGC TCGACGACGT CCTGTCCGAA 
CTCGACGATC TCCGCCAGCG CAACCTCGTG CTTGGGATGA GCCGCAAGGT GCAGACGGTC 
ATCACCACGA CCAGCCTCAA TCGGCTCGGC CAGGAGCTGG ACGATTTCCG GCTGTTCCGA 
GTTTGTTCTG GTATAATAGC CGAAGAACGT GTCTGA
 
Protein sequence
MDIRRVELHD FRNYAKAEIE LSPGVNVLVG ENGQGKTNAL EAMLLIAVGK SHRAHRDRDL 
IRWEQDRARI LLEASTRYGD RRLTLELGPE GRRAFANGVQ VGRMTEFVGQ VQVVLFAPED 
LDLVKGSPRV RRRFLDTELG QMEPLYLHHL SLYNRALLQR NRWLKTAPLS PDDDVLATFD 
RQIAFHGAHV IHRRLRFLAR LRAYAARIYS DIASGREEFA LAYRSSVSGV EEGMSVEEMA 
DTVQRALEKN RAQDLRFGTT SAGPHRDDIL LFLDGREVHT AASQGQQRTI ALSLRLAEID 
FMHEELGEYP VLLLDDVLSE LDDLRQRNLV LGMSRKVQTV ITTTSLNRLG QELDDFRLFR 
VCSGIIAEER V