| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_3025 |
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| Symbol | rpoN |
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| ID | 7136549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 2717235 |
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| End bp | 2718662 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643531376 |
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| Product | RNA polymerase sigma-54 factor |
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| Protein accession | YP_002427392 |
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| Protein GI | 218667002 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAAG GCTTAGAACT CAAGCTCGGC CAGCATCTGG CCATGACGCC GCAACTGCAA
CAGGCGATTC GTCTGCTGCA GTTGTCTACG GTCGATCTGC AGCAAGAGGT TCAAGGTATG
CTGGAGAGCA ACCCGCTGCT TGATGAAGAA ACCGGAGACG AAGGCGGTGG CGGGCCGATC
CCGGAGACCG TGGAACTTCC TTCCGAAGAG CGCCAGTTGG ATCTGGCGGC TGAGAATATC
CTGCCCGACG AGTTGCCGGT AGACAGCCAG TGGGACGACA TCTTCGACAT GGGAACCTCG
GGCTCCGGTA ATGGTTCCGA CGAGGATCTG CCGGATTTTG AATCGCGCAA CAGCCGCACC
CAGAGCCTGC AGGACTACCT CCGCTGGCAG GCCGACATGA CGCACTTCAC TGCTGACGAA
CGCAACATGG CGGAGTTGAT CATCGACGCC ATTGATGAGC GTGGTTATCT CGCAGACAGC
CTGGAAGACC TCGCCGCCAC AATGAATGTG CAGGAGGATG CGCTGCTGGC CGTGCTGCTC
CGTGTGCAGG ACTTCGACCC GCCGGGTGTT GGCGCGCGCA ATCTCAGCGA GTGCCTCCTG
CTGCAGCTGA AGCAGATGGT GGAAAAAGAT GACGCGCACG TGTTGCTGGC CCAGCGGATT
GTGAAGGACC ATCTGCAAGC CTTGGGCCGT CATGATTACC CGCGTCTGTG CACGGTGCTG
GGCGTGGATG AAGCGGCATT GCGTGCGGCG ATGGCGCTGA TTTCCGCACT GAATCCCAAG
CCCGGTGAAG ATGTGGGCAC CGAGAGCACC GAGTATGTGA TCCCCGATGT GATCGTGCGC
TGGGCCGGCA GCCGCCTGCG CACCGATCTG AATCCCGAGG CCATGCCCAA ATTACGCATC
AATCGTCACT ATGCCGACAT GGCGGGCGGG AAAGACGCGG CGCATAAATA CATCCAGGAT
CAGCTTAATG AAGCGCGCTG GTTTATCAAA AGCCTGCAAA GCCGCCAAGA CACCATATTG
AAGGTGGCGC GCGCCATTGT CGAACGGCAG AAGGATTTTT TTGCCAACGG GCCCGAATCC
ATGCGGCCCA TGGTTCTGCG TCACATCGCC GATGCAGTGG AAATGCATGA GTCTACGGTG
TCGCGGGTCA CCAACCAGAA ATACATGATC ACACCCCGCG GCCTCTACGA GTTCAAATAT
TTTTTTTCCA GTCATGTCGG TACCGACAGC GGGGGCTCTG CGTCGGCCAC TGCCATTCGC
GCGTTGCTCA TCAAGATGAC GCAGGCGGAA GACGCACAAC ACCCCCTCAG CGACGCGGAA
ATTGCCCGGG TGCTGGCCGA TCAGGGCATT CAGATCGCGC GGCGAACGGT GGCCAAGTAC
CGCGAAGCGG CCAATGTCCC ACCGGCGAGC CAGCGCCGTC GTTTGTGA
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| Protein sequence | MKQGLELKLG QHLAMTPQLQ QAIRLLQLST VDLQQEVQGM LESNPLLDEE TGDEGGGGPI
PETVELPSEE RQLDLAAENI LPDELPVDSQ WDDIFDMGTS GSGNGSDEDL PDFESRNSRT
QSLQDYLRWQ ADMTHFTADE RNMAELIIDA IDERGYLADS LEDLAATMNV QEDALLAVLL
RVQDFDPPGV GARNLSECLL LQLKQMVEKD DAHVLLAQRI VKDHLQALGR HDYPRLCTVL
GVDEAALRAA MALISALNPK PGEDVGTEST EYVIPDVIVR WAGSRLRTDL NPEAMPKLRI
NRHYADMAGG KDAAHKYIQD QLNEARWFIK SLQSRQDTIL KVARAIVERQ KDFFANGPES
MRPMVLRHIA DAVEMHESTV SRVTNQKYMI TPRGLYEFKY FFSSHVGTDS GGSASATAIR
ALLIKMTQAE DAQHPLSDAE IARVLADQGI QIARRTVAKY REAANVPPAS QRRRL
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