Gene AFE_2517 details

Gene Information

• Locus tag: AFE_2517
• ID: 7136270
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 2237968
• End bp: 2239893
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643530873
• Product: ATP-dependent helicase, DEXD family
• Protein accession: YP_002426897
• Protein GI: 218665873
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.764826
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCGGGCG TGACTGGGGG AGGCCAGGAC TGGTCTGTGC TGTTGGGCGA GACCGGCGCG 
TTGGCACGGG CGTTGCCGCA ATTCAGGGCA CGGGAGCAGC AACAGGCTAT GGCCGCGCAG 
GTGGCCCATA CCCTGCGCGA CGGAGGGGTG GCGCTGATCG AGGCAGGGAC GGGCACCGGT 
AAAACCTTCG CTTATCTCCT GCCCGCCATG CTTTCGGGGC GCAAGGTGCT GGTTTCTACC 
GGCAGCAAGG CGCTGCAGGA TCAGATACTG GAGAAGGATA TCCCGCTGCT GTTGCGGGCG 
ATGGGAAAGC CCTTGCGCGT GAGTCGCCTT AAGGGGCGAG CCAACTATCT CTGCCGGCAT 
CGTCTGCAAC GCTTCAGTGC CGAGGGTGTG GCGCCAGCCT TGGTGGCACC CTTGGCGAGG 
GTGGCCGACT GGGCGGGGCG GACGCGGGAG GGCGACGTCA GTGAACTGAC CTCGGTGCCC 
GAAGATTCGC CGATCTGGCC TCTGGTAACG TCGACCCGGG ACAACTGTCC TGGCAGTGAA 
TGCCCAGAAT ATGGGCGCTG CCATGTCATC GAGGCGCGGC GCCAGGCTCA GGAGGCGGAG 
ATTCTGGTGG TGAATCATCA TCTGCTTTTT TCTGACTTGG CGTTGAAGGC CAACGGTATG 
GGGGACCTGT TGCCGCGAGT CGATGCCATG GTGCTGGATG AGGCCCATCA AGTGCTGGAT 
CTGGCCGGGC GTTATTTCGG CCAGCACCTG AGCAGCCATC AGCTCTGGGA CTGGGGGCGG 
GATAGCCGCG CCGAAACTCT GGCCGAAGCG GGGGATGACG AGGGTTTGCT TGCAGCAGCC 
GCACAGGTGG AAACGCAAAC GACGGCGTGG CGGACGGTTC TGGGTCCGGG TGACGAGCGT 
GGCTCCTGGG CTTTGAATCC CGATAGTGCG GAAGGCTCTG CCTTCGCCCG TTTGCGTCAG 
GCGGTGGCGG AACTGGGTCA GGCACTGAAC GCTGCAGCAG CGCGCGGCAA GGGCCTGGAA 
CAATGTGCGG CGCGTGGGGT GGTGCTGCTG GCGACGGTGG ATTTCTTTGC CGCGCACAAC 
GCCCCGAACA TGGTGTTCTG GCAGGAGAAG AAATCTCGCA CGGTGCAGCT CCATGCCACC 
CCCCTGGATG TGGCGGCGCC CTTGCAGCGG CACCTGCTGG AACCGGTGGA AAGTGTCATT 
CTCACCAGTG CGACCTTGCG GGTAGGTGAC AGTTTCGCCA GTACTGAACG TGCTCTGGGC 
CTGACGGCGG TGAGCACCCT TACAGCAGCC TCGCCCTTTG ATTATGCGCG GCAATCCCTG 
CTCTATCTAC CGCCTCTGAT GCCGGAGCCC GGTCATCCTT CCTATACACG GGCTTGCTTG 
GACGCCGCGG CACCAGTCAT CGAGGCCAGT GGCGGACGGA CCTTCTTTCT CTTCACCAGT 
CACCGGGCTT TGCAGGAGGC GGCGGTATCC CTGCCACAGC GGTTGTCCTT CCCCATTCTG 
GTGCAGGGGA GTATGCCGCG CCCCCGTCTC CTGGACCGTT TTCGCAGTTT GGGTAATGCG 
GTTCTGCTGG GTGCGGCCAG CTTTTGGGAG GGGGTGGACG TGCAGGGCGA GGCCCTCTCC 
TGTGTCATCA TCGACAAATT GCCCTTTGCC AATCCCTCTG ATCCGATTCT GCGTGCCCGC 
ACGGAGCAGT GTCAGGCAGA GGGCGGTGAA CCCTTCCGCG AGTTACAGAT TCCTCAGGCG 
GTGATTGCCC TGCGCCAGGG TGTAGGGCGG CTGATTCGCT CGGAGATGGA TCGCGGTGTG 
CTGATGCTTT GCGACCCGCG CCTGCGCAGC AAGGGTTACG GGCGCATCTT CCTCGACAGT 
CTGCCGCCTA TGCGGCGTGT TTCCAGCCTC GACGCGATCC ATGCGTTCTG GCGGGGAGAA 
GCCTGA 

 

Protein sequence

MSGVTGGGQD WSVLLGETGA LARALPQFRA REQQQAMAAQ VAHTLRDGGV ALIEAGTGTG 
KTFAYLLPAM LSGRKVLVST GSKALQDQIL EKDIPLLLRA MGKPLRVSRL KGRANYLCRH 
RLQRFSAEGV APALVAPLAR VADWAGRTRE GDVSELTSVP EDSPIWPLVT STRDNCPGSE 
CPEYGRCHVI EARRQAQEAE ILVVNHHLLF SDLALKANGM GDLLPRVDAM VLDEAHQVLD 
LAGRYFGQHL SSHQLWDWGR DSRAETLAEA GDDEGLLAAA AQVETQTTAW RTVLGPGDER 
GSWALNPDSA EGSAFARLRQ AVAELGQALN AAAARGKGLE QCAARGVVLL ATVDFFAAHN 
APNMVFWQEK KSRTVQLHAT PLDVAAPLQR HLLEPVESVI LTSATLRVGD SFASTERALG 
LTAVSTLTAA SPFDYARQSL LYLPPLMPEP GHPSYTRACL DAAAPVIEAS GGRTFFLFTS 
HRALQEAAVS LPQRLSFPIL VQGSMPRPRL LDRFRSLGNA VLLGAASFWE GVDVQGEALS 
CVIIDKLPFA NPSDPILRAR TEQCQAEGGE PFRELQIPQA VIALRQGVGR LIRSEMDRGV 
LMLCDPRLRS KGYGRIFLDS LPPMRRVSSL DAIHAFWRGE A