| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2333 |
|---|
| Symbol | |
|---|
| ID | 7134273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 2078182 |
|---|
| End bp | 2079498 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643530697 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | YP_002426725 |
|---|
| Protein GI | 218666825 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAAAC AATCCCTGGT TCCCAGTCCA CCGCCCTCTG AATCTTCCGC AAAAAATCAT
ATTCGTCACG GCACCCGCTC ATTTCGAAAT ACGAGCCTGG CGCTTTTCGC AGCAGGATTC
GCCACATTCA GCATGATTTA TTGTGTACAG CCCCTGATGC CTGCCTTCAG CAGAGAGTAT
GGAGTGGCCG CCACGAGTAG TGCTCTTTCC CTGTCTTTGA CTACGGGGAT TCTGGCTTTC
ACGATGCTCC TGGTCGGGAA CTGGTCGGAT CGTCTGGGAC GTAAGCCAAT CATGGTCTGG
TCACTGTTCA TGTCCGCATT TCTGGTGCTC GCCACGGGAT TCGCTCCAAA TTGGGATGTT
TTTCTGCTGG CGCGGGCCTT GCTGGGCATC AGCATCAGTG GTTTGCCGGC AGTAGCTATG
ACGTATCTCA ATGAGGAGGT ACACGCGGAC TCTATTGGCA TAGGTATGGG GTTATATATC
AGTGGAAGTG CAGTGGGTGG CATGTCAGGT CGGCTGGTTG CTGGCGTTTT GGCCAATTAT
TGGGGTTGGC ATGTTGCCAT TGTCAGCATC GGCGTCATCA GCTTGATCGC TGCCGTTCTG
TTTGTTCGCA GCTTGCCAGA TTCGCTGCAC TTTTCCCCAC AGCATGTGTC CTGGAACGGC
AGAGTCCAGC AAATACGTAT GTTGTTCAAA GATTCGGGGC TCCCTTGGTT GTTTGCGGAA
GGCTTTTTCC TGATGGGCAT TTTCGTGACC TTTTATAATT ATCTGACTTA TCGCCTGGTG
ACTTCTCCTT ACGACTTCAG TCAGGCTCAG GTGGGACTGA TCTTCAGCGT CTACGGGGTT
GGTATTTTCA GCTCTCCAGT GATGGGACAT ATTGCCGGAT GGGTGGGGCG TCGAAAAGTG
CTGTGGATGG CTTTCGCGTT GGTGATTACT GGAGTCCTTC TCAGTTTTGC GGGGGCCGTA
TGGGCGATTA TGCTCGGCAC CATATTGTTG ACTTTTGGTT TTTTTGGAGG ACATTCCATT
GTCAGCAGTT GGGTGGGTCG GAGAGCGCAT GGAGCCAAGG CGCAGGCAGC ATCATTGTAT
CTCTTTTTTT ATTATCTGGG TTCGGCGGTA CTGGGAAGTT CCGGAGGATA TTTCTATTCT
GGCTGGGGTT GGGATGGTGT GGCCGGGCTG CTGACTTTTC TGGCAGCATC TGGACTGCTC
ATCGCCTGGA AACTGCGTGC GCTGCCGCCT CTGACTTCAA TATCGTCAAT AACTGTCGGA
GAAGCGGTGA ATGGTCCCTA CAACGGTAAA CCACATGGAT ATCAGAACGC GCGCTAG
|
|---|
| Protein sequence | MRKQSLVPSP PPSESSAKNH IRHGTRSFRN TSLALFAAGF ATFSMIYCVQ PLMPAFSREY
GVAATSSALS LSLTTGILAF TMLLVGNWSD RLGRKPIMVW SLFMSAFLVL ATGFAPNWDV
FLLARALLGI SISGLPAVAM TYLNEEVHAD SIGIGMGLYI SGSAVGGMSG RLVAGVLANY
WGWHVAIVSI GVISLIAAVL FVRSLPDSLH FSPQHVSWNG RVQQIRMLFK DSGLPWLFAE
GFFLMGIFVT FYNYLTYRLV TSPYDFSQAQ VGLIFSVYGV GIFSSPVMGH IAGWVGRRKV
LWMAFALVIT GVLLSFAGAV WAIMLGTILL TFGFFGGHSI VSSWVGRRAH GAKAQAASLY
LFFYYLGSAV LGSSGGYFYS GWGWDGVAGL LTFLAASGLL IAWKLRALPP LTSISSITVG
EAVNGPYNGK PHGYQNAR
|
|---|
| |