Gene AFE_2124 details

Gene Information

• Locus tag: AFE_2124
• Symbol: shc
• ID: 7135256
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 1877386
• End bp: 1879317
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643530493
• Product: squalene-hopene cyclase
• Protein accession: YP_002426525
• Protein GI: 218665690
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.888733
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCGTA TGCTGCAACC GTTGCACTCT GGCGCGGGCA TTTTTCGTTC GTCACTGGAT 
CGGGTGATCG CGCAGGCGCG TCAGGCGTTG GGCGGTCGGC AGGCGGAGGA TGGTCACTGG 
TGTTTCGAGT TTGAGGCCGA TTGCACCATT CCTGCCGAAT ATATTCTGAT GCAGCATTAC 
ATGGATGAGC GGGACGAGGC TCTGGAGGCC AGGATCGCCG TCTATCTGCG CGGCAAGCAG 
GCGGATCACG GGGGCTGGCC CCTCTATTAC GGCGGCCATT TTGACCTGAG TGCATCGGTA 
AAGGTCTATT ACGCGCTGAA ACTTGCGGGC GATGACCCCG AACTGCCCCA CATGCGGCGC 
GCCCGGGAGG CGATTCTCGC CCATGGCGGA GCGGAACGCA GCAATGTGTT CACGCGCATT 
ACCCTGGCGC TTTTTGCCCA GGTGCCGTGG CGGGCGGTGC CCTTCATTCC GGTGGAAATC 
ATGCTGCTGC CGCGCTGGTT TCCCTTTCAT ATCTACAAGG TCGCTTCCTG GTCGCGCACG 
GTGATGGTGC CCCTGTTTAT TCTGTGCAGC CTCAAGGCGC GCGCCAAAAA TCCCCTACAG 
GTGCATATTC GGGAGTTGTT CCGTCGACCG CCGGATCAGA TCACGGATTA TTTCAGCCAC 
GCCCGGCGAG GGATTGTGGC ATACATCTTT CTGTCTCTGG ATCGATTCTG GCGGTTGATG 
GAGGGCTGGA TACCGCACGG TATCCGGCGC CGTGCCCTGA AGAAGGCGGA GGCATGGTTT 
ACCGCGCGGA TCAATGGGGA AGATGGTCTG AACGGCATTT TCCCGGCCAT GGTGAACGCC 
CACGAGGCCC TGGAGCTGCT CGGCTATCCG CCGGATCATG ATTATCGTCG GCAAACCGGG 
GCGGCGCTGC GCAAACTGGT GGTGGAGCGG GCGAACGATG CCTATTGTCA GCCCTGTGTA 
TCACCCGTCT GGGATACCTG TCTCGCGCTC CACGCCCTGC TGGAGGAGGA TGGCGAGGTC 
TCTCCGGCGG TGCAAAACGG TATTCGCTGG CTCAAGAACC GGCAGATCGG CGCCGAACCC 
GGCGACTGGC GGGAGTCACG CCCCCATTTG GCGGGCGGTG GCTGGGCGTT TCAATATGCC 
AATCCGTATT ATCCGGATCT GGATGACACG GCGGCAGTGG GCTGGGCCCT GGCGCGGGCC 
GGGCGCGCGG AGGATCGAGA CAGTATCGAG AAGGCGGCGA ACTGGCTGGC GGGCATGCAA 
TCCAGAAACG GCGGTTTCGG CGCCTATGAT GTGGATAACA CCCACTACTA CCTGAACGAA 
ATTCCCTTTG CTGACCACAA GGCCCTGCTG GACCCGCCGA CGGCCGATGT CACCGGGCGA 
GTGGTGGCCT TTCTGGCGCA TCTGGCGCGG CCACGGGACC GCGATGTGCT GCGGCGTGCC 
GTGGCTTATC TGCTGCGTGA ACAGGAGTCA TCGGGCGCCT GGTTCGGGCG TTGGGGAACC 
AACTACATCT ACGGAACCTG GTCCGTGCTC ATGGCACTGG CCGAACTGAA TGATCCTTCC 
CTGAAGCCCA CCATGGAACG CGCGGCGTAC TGGTTGCGCG CGGTACAGCA GGGCGACGGC 
GGTTGGGGTG AAAGCAACGA TTCCTACAGT GACCCCGGTC TTGCCGGGAT GGGCCAGACC 
TCTACCGCAG CGCAGACGGC TTGGGCCTGC CTGGGTCTGA TGGCGGCGGG AGACCGGGAT 
AGTGTCGCCC TGCATCGTGG CATAGCCTGG CTGCAGGCGC ATCAGGAAGG GGATGGATGC 
TGGCAGGCGC CATTTTTTAA CGCACCAGGA TTCCCGAAGG TTTTCTACCT GATTTATCAT 
GGGTATGCGT TTTATTTCCC GCTTTGGGCA CTGGCCCGCT ACCGGAACTT GGGATGCATG 
GCGCACGAAT AG 

 

Protein sequence

MNRMLQPLHS GAGIFRSSLD RVIAQARQAL GGRQAEDGHW CFEFEADCTI PAEYILMQHY 
MDERDEALEA RIAVYLRGKQ ADHGGWPLYY GGHFDLSASV KVYYALKLAG DDPELPHMRR 
AREAILAHGG AERSNVFTRI TLALFAQVPW RAVPFIPVEI MLLPRWFPFH IYKVASWSRT 
VMVPLFILCS LKARAKNPLQ VHIRELFRRP PDQITDYFSH ARRGIVAYIF LSLDRFWRLM 
EGWIPHGIRR RALKKAEAWF TARINGEDGL NGIFPAMVNA HEALELLGYP PDHDYRRQTG 
AALRKLVVER ANDAYCQPCV SPVWDTCLAL HALLEEDGEV SPAVQNGIRW LKNRQIGAEP 
GDWRESRPHL AGGGWAFQYA NPYYPDLDDT AAVGWALARA GRAEDRDSIE KAANWLAGMQ 
SRNGGFGAYD VDNTHYYLNE IPFADHKALL DPPTADVTGR VVAFLAHLAR PRDRDVLRRA 
VAYLLREQES SGAWFGRWGT NYIYGTWSVL MALAELNDPS LKPTMERAAY WLRAVQQGDG 
GWGESNDSYS DPGLAGMGQT STAAQTAWAC LGLMAAGDRD SVALHRGIAW LQAHQEGDGC 
WQAPFFNAPG FPKVFYLIYH GYAFYFPLWA LARYRNLGCM AHE