Gene AFE_2057 details

Gene Information

• Locus tag: AFE_2057
• Symbol: secD
• ID: 7134691
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 1806274
• End bp: 1808058
• Gene Length: 1785 bp
• Protein Length: 594 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643530428
• Product: protein-export membrane protein SecD
• Protein accession: YP_002426460
• Protein GI: 218665217
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCGTT ATCCATGGTG GAAGTACCTG ATCATCCTCG TCGTTGTACT GCCTTCCCTG 
TTTTACGCAC TGCCCAATTT CTATGGCTGG CATTCCGCGG TGGAGGTGCG CGCGCCCGCG 
GGGACCCTCC TGCCGCCGGT GGCCACCCAG CAGGGCTGGC TGCAAGCCGC TGGAATTCCG 
GTCACCCGCG TCAGTTCCGG TGAGAAAGGG AGCACCTTCT TTTTCCCGAA CAACGACGCC 
CAGGGGCTGG CCGAGACCTT GCTGCAAAAC AAGCTCCCGG CCAACGCTCA GGTCATTCTT 
TCGCAGATGT CCGCAGAGCC GGACTGGCTA CGCAGTATTG GTGGCAAACC CGTCAATCTG 
GGCCTCGACC TGCGCGGCGG CGTGTATCTC CTGCTGCGTG TGGATACCGA CGCCGTCATC 
AAACATGCAC TGCAACAGGA CAGTGGTAGC TTGCGCACCT TCCTTCGTCA CCGAAATCTG 
CAATATCTGG CGGTCAACAT GACCGGGCCG CAAAGTCTTG CCATCGAAAT GGAAAACGCC 
GCAGTCGCGG CACAGGCGCA AAAGGCTGTC GCCGAACGGT ATCCGGATTA TGCCGTCGTT 
CTGCAACCCC ATGCGGTGCT GAGTATCAGC ATCACCCCCG ACGCTGCCAG CAAAATGAAA 
GACGATGCAC TGCAACAGGC CATTGTCGTT ATTCGCAATC GTATCGACGA ACTGGGCGTC 
TCGGAGCCGG TCATCCAGCG CCAGGGCGCT GATCATATCG CCGTGCAGTT ACCCGGTGTA 
CAGGATACCC AGCGAGCCAA ATCCATTATC GGCTCCACCG CCCAGCTCGA ATTCAAGATG 
GTGGATGACC AGGCCAACAT GACAGAGGCC CTCAAGGGCG AACTGCCCGC CGGTACCGCG 
CTCTTTTACG GCGTTCACGG TACACCTTAC GTGCTGTACA CCAATACGGT ACTTACCGGT 
CGCTACCTCA GCAATGCCAG CGCGGGGGTG GACAATAACA GCGGCCAGGC CGTTGTCAAT 
GTCAGTTTCA ACAACGAAGG GACGCGCATC TTCGGTGACC TGACCACCAA AAACGTGGGC 
AAGCGCATGG CGATTCTGCT GGATAACAAG GTGGTGACCG CGCCGGTGAT ACGTGAAGCC 
ATTACGGAGG GCCGGGCCCA GATTACCGGA TTCTCCGGTT TGAAAGACGC CAGTAACGCC 
GCCATCGAAC TGCGCGCCGG CGCATTGCCC GCACCCGTTC ATATCTCCGA GGAGCGTACC 
GTCGGACCTA CCCTGGGTCA GGACTCCATC CATGACGGGG TGATGGCCGT GGTTTTCGGC 
ATGGCCTTCG TAGTGCTCTT CATGACGCTC TATTACCGGG CTTTTGGTTT GATAGCCGAT 
GTCGCCATTC TGGTGAATAT TCTGGCTATT CTGGCGGTGC TTTCGATCAT GGGCGGGACG 
CTGACGCTGC CGGGTATCGC CGGTATCGTG CTGAAGATCG GTCTGGCGGT GGATGCCAAC 
GTGCTGGTAT TCGAGCGCAT CCGCGAGGAA CTCCGGCATG GCATGAGCAC TCGCGCGGCC 
ATCGACGCGG GTTTCAAGAA GGCCTTTGCG ACCATTGTGG ACTCCAATAT CACGGTCCTG 
ATCGCTGCCC TGGTGCTTTT CCAGTTCGGT ACCGGCGCCA TCAAGGGCTT TGCGCTGGTA 
CTAACCATCG GCGTGATCAC CTCCATGTTT ACGGCCACCA TGATGAGCCG TGGCATCATC 
GAACTCGCCC TCGGCAAGCG GCGCGTGCAA AAGCTTTATA TCTGA 

 

Protein sequence

MTRYPWWKYL IILVVVLPSL FYALPNFYGW HSAVEVRAPA GTLLPPVATQ QGWLQAAGIP 
VTRVSSGEKG STFFFPNNDA QGLAETLLQN KLPANAQVIL SQMSAEPDWL RSIGGKPVNL 
GLDLRGGVYL LLRVDTDAVI KHALQQDSGS LRTFLRHRNL QYLAVNMTGP QSLAIEMENA 
AVAAQAQKAV AERYPDYAVV LQPHAVLSIS ITPDAASKMK DDALQQAIVV IRNRIDELGV 
SEPVIQRQGA DHIAVQLPGV QDTQRAKSII GSTAQLEFKM VDDQANMTEA LKGELPAGTA 
LFYGVHGTPY VLYTNTVLTG RYLSNASAGV DNNSGQAVVN VSFNNEGTRI FGDLTTKNVG 
KRMAILLDNK VVTAPVIREA ITEGRAQITG FSGLKDASNA AIELRAGALP APVHISEERT 
VGPTLGQDSI HDGVMAVVFG MAFVVLFMTL YYRAFGLIAD VAILVNILAI LAVLSIMGGT 
LTLPGIAGIV LKIGLAVDAN VLVFERIREE LRHGMSTRAA IDAGFKKAFA TIVDSNITVL 
IAALVLFQFG TGAIKGFALV LTIGVITSMF TATMMSRGII ELALGKRRVQ KLYI