Gene AFE_1974 details

Gene Information

• Locus tag: AFE_1974
• Symbol: dxs
• ID: 7134695
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 1730852
• End bp: 1732726
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643530347
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002426381
• Protein GI: 218665347
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGATT TGTTGAAGAG TATCCCCATG CCTGCCGAAC TGCGCCAGAT GTCGCGCAGT 
GAGCAGAAGA ACGTGGCCAA GGCGGTGCGC CACTTCCTCT TGGAAACGGT CAGCCGGACG 
GGTGGGCATC TCTCTTCCTG TCTGGGAGCT GTAGAGCTGA CCGTGGCGCT GCACGCCGTA 
TTCAATACGC CGGACGATCG TCTGGTCTGG GATGTCGGGC ACCAGGCATA CCCCCACAAA 
ATTCTGACCG GACGTGGTGC ACGTTTTCCG CAGTTGCGCA TCAGGGATGG TCTCTCCGGC 
TTTCTCAAGC GGGATGAGAG CCCCTATGAC AGCTTCGGCG CCGGACACTC CAGTACCTCT 
ATCAGCGCCG GTCTGGGGAT GGCGGTGGCG GCCAGGCTGG AGCATAAATC ACGGCAGGTG 
GTGGCGATCA TTGGTGACGG CGCCATGACG GCAGGTCTCG CCTATGAAGC GCTGAATAAC 
GGCGGGGTTT TGGATGCCGA CCTGCTGGTT GTCCTCAATG ACAACGAGAT GTCCATTTCA 
CCCAATGTGG GCGCGGTATC CCGATATCTG ACGCGTATTC TCTCCGGGCG CCTCTATAAC 
ACCGTACGCG AGGGTGCGGG ACAGGCATTG AGTTTCGTAC CGCCATTGCG TGAACTGGCC 
AGAAAGGCGG AAGAGGGCGT GAAGGGGCTG GTGACGCCGG GGGCGCTGTT CGAAGAAATG 
GGATTTCATT ATTTTGGTCC CATCGATGGC CACGATCTGG ATGCGTTGAT CCCGACTCTC 
GAGAACCTGA AAAAAATCAG AGGACCACGT CTGCTTCATG TAATCACCAA AAAGGGCAAG 
GGCTATGGTC CCGCCGAGCT GGATCCCTGC GGCTATCATG GAGTAACGCC CTTTAACCGC 
AGCGATGGCA GGATGGCGAA GAAATCCGCC GGTGCACCGA GCTACACCCA GGTGTTCGGC 
GACTGGCTCT GCGAAAAAGG CGCGGCGGAA AAACACCTGG TCGCCATTAC ACCGGCCATG 
CGGGAGGGCT CCGGACTGGT GCGCTTTGAG CAACTGTTTC CCGAGCGCTA TTTTGATGTG 
GGTATTGCCG AGCAGCATGC GGTGACTTTT GCAGCAGGGC TGGCCTGTGA TGGGATACAT 
CCGGTAGTCG CCATCTACTC CACCTTTTTG CAGCGGGCCT ATGACCAGCT CCTGCATGAT 
GTCGCCATCC AGAATCTGCC GGTACTTTTT GCCATCGACC GTGCCGGATT GGTGGGCGCC 
GACGGCGCCA CCCATCAGGG CGCCTTCGAC ATCGCGTATG CCCGTTGCAT ACCCAATCTG 
GTCATCATGG CCCCAAAAGA TGAGCAGGAA ATGCGCGACA TGCTCAATAC AGGCTTTGCC 
TGGCAGGGAC CTGCCCTGGT GCGTTATCCG CGCGACAACG GACTGGGCGT AGCCCTGGAC 
AGAGATTTAT CGCGGCAGAT CCCTGTCGGC AAGGCCGAGA TCCTGCGGAA AGGCAAGGAT 
CTGGCGATTC TCGCCTTCGG TACCCGGGCG GCAGCGGCCA TGGCGGCGGG CGAAACCCTC 
GACGCCACCG TCGTCAACAT GCGTTTCGTC AAGCCGCTGG ATACGGAATT GTTGACCAGC 
CTAGCACAGA CCCATCGCGC ATTTTTGACG GTGGAGGAGG GCGCGCGTAT GGGCGGTGCC 
GGTAGTGCCG TGGCAGAATT CCTGCTCAAT GAGGGCGTCG TGGTACCCAT GCGTCTACTC 
GGTTTACCCG ACATCTTCAT CGAACAGGGC GATGCCGGCC GATGGCTGGC AGATCTGGGC 
CTGGATGCCG CAGGAATCGA AAAGTCCGGC AGAGAATTGC TGACGTTGCT TGCCCCGTCA 
CCAGTCCGGG CGTAG 

 

Protein sequence

MSDLLKSIPM PAELRQMSRS EQKNVAKAVR HFLLETVSRT GGHLSSCLGA VELTVALHAV 
FNTPDDRLVW DVGHQAYPHK ILTGRGARFP QLRIRDGLSG FLKRDESPYD SFGAGHSSTS 
ISAGLGMAVA ARLEHKSRQV VAIIGDGAMT AGLAYEALNN GGVLDADLLV VLNDNEMSIS 
PNVGAVSRYL TRILSGRLYN TVREGAGQAL SFVPPLRELA RKAEEGVKGL VTPGALFEEM 
GFHYFGPIDG HDLDALIPTL ENLKKIRGPR LLHVITKKGK GYGPAELDPC GYHGVTPFNR 
SDGRMAKKSA GAPSYTQVFG DWLCEKGAAE KHLVAITPAM REGSGLVRFE QLFPERYFDV 
GIAEQHAVTF AAGLACDGIH PVVAIYSTFL QRAYDQLLHD VAIQNLPVLF AIDRAGLVGA 
DGATHQGAFD IAYARCIPNL VIMAPKDEQE MRDMLNTGFA WQGPALVRYP RDNGLGVALD 
RDLSRQIPVG KAEILRKGKD LAILAFGTRA AAAMAAGETL DATVVNMRFV KPLDTELLTS 
LAQTHRAFLT VEEGARMGGA GSAVAEFLLN EGVVVPMRLL GLPDIFIEQG DAGRWLADLG 
LDAAGIEKSG RELLTLLAPS PVRA