Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_1960 |
Symbol | dacB |
ID | 7136155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 1713192 |
End bp | 1714694 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643530333 |
Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
Protein accession | YP_002426367 |
Protein GI | 218665828 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.164668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTCGG ATGGGAGGCT GTGGAAAGGG GATGGAGGCC GGTTATGGCG GTATTTTTTT GTCGGGATAT TGCCGTTTTT CTGGCTTATG CCCGCTATCG CCGCTACCGG CCAGAAGGAC GCAAACACCC AGTTTGGCGA CGGCCAATGG AGTATTCTGA TTCAGGATGT GCAAAAGGGC AGGCCCACTC TGAGTGTGCA GGCAGATCAT GGACAACTGC CTGCGTCCAC AGCGAAGCTG CTGACCACAG CGTATATTCT GCACGAACTG GGGCCTGAAT CTCACCAGAA AACTCGGATA CTGGCCCGGA CCATCGATGA TGGCGTAGTG CGGGGGCCCT TGATTTTTCT GGGGGGTGGC GACCCCGATC TTTCCAGCCG TCGCTTCCCG TTTGTCAGGC GAACAGTACG AGATGACCCC ATGTACCCTA TGCGCATGCT TGCCGCTCAA GTATGGGCTG CGGGTGTTCG CCAAATTCCG GAGGGTATTC TGGCCGATGC CACGTACTTT CCCGCAGATA GCGCGCTACC GGGTTGGACG GAACAGGATC AGCGCTATTG GTATGGCGCA CCGATCCATG CACTCATGTT CAACGACGCC ATGATCGCGG TACGAATCAG ACCGGGGCGG GCCCCGGGGG TACGCACCAA CGCCGAGATC ATGCCCAACC CGGGAGGGTT CATTCGGAAC ACGGTGATCA CCGTTTCGGC GGAGGATCCC ATTCGTCCCG TACGCCTGGA AAAATCTGGA AGCGGATATC TATTGACTGG CGCGATTTCC GCCAAGGGCG GTATTTTTGC CGCGATGCTG GCGCAGCCTG ATCCAGCCTA TTTTGCCGCC GTAGCATTGC GACAGGCTTT GGAGGAAAAG GGTATTCTTG TAGGTAATCC TATCCAAGCA TTGAACAACA AGCGCGGTGC AAAGCAGTCC AGGGGATATG CGCACTATGC CTTATTGGCC AAACACGAGT CACCGCCATT GGTGGAGGAG ATCACGGTGG CCAACAAGGT GAGTGAAAAC ACCCATGTAG AAGTACTGCT CCGGGATGCG GATCTGGCTC GCGGCGGTGA TGGAAGCCGT GCATCGACCA TGCAGGGCTT GCACCGTTGG CTTTCTGTGA ACGGTATACT TGACACCCAA TCTCGACTGG TAGATGGCTG CGGATTATCT CGTGAGGATC GCCTCAGCGC CGCAGATCTG GTGCGTATGC TGTTGCACTC TTATCAGGAA CCCTGGGGGG GCTCCTGGCG CGATTCGCTG CCGGTCAATG CCGAAGATGG AACGCTCCGG CATCGTCTGA GCGCTCTGCC TGCGGGTACG GTGCAAGCCA AAACGGGTAC TCTGCGCGAT GCGTTGTCTC TTGCTGGTTT TATTCGGGAT AACCTCGGCC ACCCACAATA TGCGTTTGCC ATTTTGGTTG AACATTTCCG AGGCTCTGAA GAGCGTATCC GCAGACGAAT GGACGCCCTG GTGCAGCGTG TCGCTTTGAG CGGCCCCATG TAG
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Protein sequence | MRSDGRLWKG DGGRLWRYFF VGILPFFWLM PAIAATGQKD ANTQFGDGQW SILIQDVQKG RPTLSVQADH GQLPASTAKL LTTAYILHEL GPESHQKTRI LARTIDDGVV RGPLIFLGGG DPDLSSRRFP FVRRTVRDDP MYPMRMLAAQ VWAAGVRQIP EGILADATYF PADSALPGWT EQDQRYWYGA PIHALMFNDA MIAVRIRPGR APGVRTNAEI MPNPGGFIRN TVITVSAEDP IRPVRLEKSG SGYLLTGAIS AKGGIFAAML AQPDPAYFAA VALRQALEEK GILVGNPIQA LNNKRGAKQS RGYAHYALLA KHESPPLVEE ITVANKVSEN THVEVLLRDA DLARGGDGSR ASTMQGLHRW LSVNGILDTQ SRLVDGCGLS REDRLSAADL VRMLLHSYQE PWGGSWRDSL PVNAEDGTLR HRLSALPAGT VQAKTGTLRD ALSLAGFIRD NLGHPQYAFA ILVEHFRGSE ERIRRRMDAL VQRVALSGPM
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