| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1726 |
|---|
| Symbol | |
|---|
| ID | 7136322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1496206 |
|---|
| End bp | 1496751 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643530107 |
|---|
| Product | conjugal transfer protein TraF, putative |
|---|
| Protein accession | YP_002426146 |
|---|
| Protein GI | 218666182 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTGGA TCTGGACCGG GCTGATCACC CTGGTCGCGG ATGTTGGTCT TTGGATGCAG
TACCAGCATC TGGTCTTCAA CGACTCGACC TGCGAGCCGG TGGGCCTCTA CCAGCTTCTC
GGCTCGCCCT ATCCTTTGCA TGATGGAGAA CTGGTCGAAG TCGAGATTCC TGGCCCCTCC
CATCACGCCG CCGTCGCGGA GGGCCTGAAG TACCAGTGGT TTCCCGCTGG ACAGCCGTGG
ATCAAAGAGA TCGCCGCCAT CCCCGGGCAG ACCGTGCGGC TTACGAGATC CGGGGTCGGG
GTAGATGGGC ACACTCTGCC GAACTCCCGG GTGGATCGCT GGACGCCCGG CCACCATCAC
CGGATTGTCC ATTACCCTTT CGGCACCTAT CACCTGAAGC GTGGGCAGAT CTGGCTCTAC
GCTCCGGGCA ACTATGCCTT TGACTCCAGC TATTATGGCC CGGTCCCGGA GACCAGCATC
CTGCAACGAG CGGTTCCCTG GTGGACGATT CCCGGGAGTC AGTTCTGGCT TCGGAACGGT
GACTAA
|
|---|
| Protein sequence | MFWIWTGLIT LVADVGLWMQ YQHLVFNDST CEPVGLYQLL GSPYPLHDGE LVEVEIPGPS
HHAAVAEGLK YQWFPAGQPW IKEIAAIPGQ TVRLTRSGVG VDGHTLPNSR VDRWTPGHHH
RIVHYPFGTY HLKRGQIWLY APGNYAFDSS YYGPVPETSI LQRAVPWWTI PGSQFWLRNG
D
|
|---|
| |