Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_1527 |
Symbol | nifA |
ID | 7135963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 1323925 |
End bp | 1325562 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643529914 |
Product | Nif-specific regulatory protein |
Protein accession | YP_002425954 |
Protein GI | 218665550 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGATC GCGTAACACC CAACCATTTT CAGGAGCTGA CGACCATCTA TGAGGTGAGT AAGGTGCTCA GCTCTTCCAT GGATCTTGAA CACACTCTGA ACGATGTTCT GAAGACGCTG GAGAGCCATC TGCATATCTC ACCGTCCATG ATCGTATTGC GCATGAACGA GGAAATAGTG GGGGTAATCG CGGCCACGGG GTTGTCCGTT GCGGAAATAG AACGGGGGCG TTATCGGTTG GGGGAGGGGA TGATTGGCAA GATCATGCGT GCCGGCATGC CGATAGTGAT TCCTGATGTC TCTCAGGAAC CGGCTTTTCT GCACCGCGCC TTTGAACCGG AGATCAGTCA GCGCTTGCAT GCTTTTGTAG GGGTGCCGAT CAAGGTGGGA TATGAGTGTA TCGGTGTGCT CGCCATCTAT CGCAGTGAGC GACACAAAGG CGTGAGTTTC CGTTCCGATG TCCGCTTGTT GCAGATGATC GCCAATCTGG TGGGACAGAC CGTTAATCTG CATCAGGGTA TCTCCGCGGA ACGAAACCGC CTTTTGCAGG AAAAGCATCG TCTGCAGAAG GAGTTACAGA AACGATACAG CATCAAGAAT GTCATCGGCA ACAGCCGGGC CATGCAGGCG GTATTCGCCG ATGTGCATCA GGCGGCACCG GGCAAGGCGA CGGTGTTGCT GCGCGGTGAA TCCGGCACCG GGAAGGAAGT CATCGCCCGC GCCATTCATT ATCTCAGCCC CCGTCGCGAC AAAGCCTTTG TTTCGCTCAA TTGCGCGGCG CTCCCGGAAA GCATTCTCGA GTCAGAACTC TTCGGACATG AGCGCGGCGC GTTTACCGGC GCCACCCAGG AGCGCAAAGG GCGCTTTGAA CTGGCAGATG GCGGCACGCT GTTTCTCGAC GAGATCGGCG ACATCTCTCC GGCTTTTCAG GCGAAGCTCT TACGGGTGCT GCAGGAGCGT GAATTCGAGC GGGTAGGCGG AACGCAGACC CGGCGGGTCA ATGTGCGCAT TATCGCAGCC ACCAATCGCA ACCTCGAAGA GGCGGTGAGC AAGGGCGAGT TCCGCGCCGA TCTGTACTAT CGGATCAATG TCGTCAGTAT TTTTCTGCCC CCACTGCGGG AGCGTCGCGA GGATATCCCC GCCTTGATCG AACATTTCCT CGCCCGTTAC AACGCCGAGA ATCAGCGCAA ACTGACCCTC ACCCCGGAAG CCTTGCAAAC CATGGTGTCC TGCTACTGGC CAGGTAACGT GCGGGAATTG GAAAACTGCG TCGAACGTAC CGCCACCATG ATGCGCGGCG ATATCATCCG CAATCTGGAC GTGCCCTGTC AGCGCAATCA GTGCCTGTCC ATGGCCTTGC GGCCGCTGGA AGGGAGTCAT CCCATCGTCA CCATGAAGCT GTCGAGCGGC ATGAGTGTTC CGCCTCATGC AGCGCCTGAT GTGGAGGGGC AAGTGACGGA TGCATCCGGG GCTGGTGATG GGGAAGGTTC CTTGCCTTTG TCGGAGCGGG ATCGCCTGAT CCAGGCCATG GACCGCTGTG GCTGGGTACA AGCCAAAGCC GCCCGTTTAT TGGGGACGAC CACCCGCAAA CTCGGTTATG CCCTCAATAA GCATGGCATA GAAGTTAAAA AACTCTAA
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Protein sequence | MKDRVTPNHF QELTTIYEVS KVLSSSMDLE HTLNDVLKTL ESHLHISPSM IVLRMNEEIV GVIAATGLSV AEIERGRYRL GEGMIGKIMR AGMPIVIPDV SQEPAFLHRA FEPEISQRLH AFVGVPIKVG YECIGVLAIY RSERHKGVSF RSDVRLLQMI ANLVGQTVNL HQGISAERNR LLQEKHRLQK ELQKRYSIKN VIGNSRAMQA VFADVHQAAP GKATVLLRGE SGTGKEVIAR AIHYLSPRRD KAFVSLNCAA LPESILESEL FGHERGAFTG ATQERKGRFE LADGGTLFLD EIGDISPAFQ AKLLRVLQER EFERVGGTQT RRVNVRIIAA TNRNLEEAVS KGEFRADLYY RINVVSIFLP PLRERREDIP ALIEHFLARY NAENQRKLTL TPEALQTMVS CYWPGNVREL ENCVERTATM MRGDIIRNLD VPCQRNQCLS MALRPLEGSH PIVTMKLSSG MSVPPHAAPD VEGQVTDASG AGDGEGSLPL SERDRLIQAM DRCGWVQAKA ARLLGTTTRK LGYALNKHGI EVKKL
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