Gene AFE_1396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_1396 
Symbol 
ID7134259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp1210286 
End bp1211725 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content58% 
IMG OID643529788 
Productserine protease, DO/DeqQ family 
Protein accessionYP_002425828 
Protein GI218668070 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.333333 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCTTT GTATGGGTTT GGGACTGAGC ATAGGGGCGA TGACGCCTGC TTGGGCGGAT 
TCCGGTGCCA GCGGTCAGGC GTTGGTGGGG CTGCCTGATT TTACGCCCAT CGTCAAGCAG
TATGGACCTG CAGTAGTGAA CATCAGCACG ACGGAGACCA GAGTGGCGCG TGGTGTGACT
TCCCCCTTCC CGCCGAACTC TCCCCTGAAT CAGTTTTTCG CCCCCTTCTT TGGCGCACCG
GGGCAACCTG GAGCACCTGG TGGCGGAGCC GGACAGAAAT ATCAGGTGCA ATCCCTGGGT
TCCGGTTTTG TCATCAGCTC CGACGGCTAT ATCGTGACTG CGGCGCATGT GGTGAAAGGG
GCTCAGAAGA TCATTGTCAG TCTCACCAAT CATCATCAAT ATGCAGCTCA CCTGGTGGGC
CTGTCGGCGC GTATGGATGT GGCGTTGCTC AAAATTGACG CGAAGAATCT GCCGGTGGTA
CAGATTGGTG ACTCCAGCAA GCTGGAGGTC GGACAGTGGG TGCTGGCGGT GGGTTCGCCC
TTCGGCTTTG AGAACAGCGT CACCCAGGGT GTGATCAGTG CGACCTCGCG GCCTTTGCCG
GATGATCCCT ACATCCCGTT CGTTCAAACG GATGTGCCGA TCAACCCTGG TAACTCCGGT
GGCCCGCTAT TCAATATGCG CGGTCAGGTC ATCGGCATCA ACGACCAGAT CTATACCAAT
AGCGGTGGCT ACATGGGGTT GTCTTTCTCT ATCCCCATCA ATGTCGCCAT GGATGCGGTC
AAACAGTTAA AGCTGCATCA GAAAGTGCAT TTTGGCTGGC TCGGGGTCAT GATTCAGGAT
GTCAGCATGG ATCTCGCCAA GTCCTTCCAC ATGAAAGAGC CGGTGGGTGC CTTGGTGTCA
CAGGTTGTGC CTGACGGTCC GGCTGCCAAG GCGGGGTTAC GTCCGGGAGA TGTCATTGTC
TCCTTTGACG GTCAGGCCAT CTATAACTCT GGTCAATTAC CGCCGCTGGT GGGAGTATTG
CCCGCCGGTT TCAAGGCGAA GCTGGGGGTT ATCCGTGATG GCAAGCCCAT GAGCCTCAAC
ATCGTGGTGG AGAGTCTGCC CGGCAACCTG GAGAATACGG TGGAATCCGC CGCATCCGGC
GGTCCGGCGC AGGAAGGTGA AGTCAAACGA CTGAATGTGC AGGTGGGTCC GCTGACTGCG
GAGGCACGTA AGCAACTGCA CGTGAATACT GGTGTCCTGG TCCTCGGGGT TGGTGTGGGG
CCGGCGGCAG AAGCCGGTAT TCGTCCCGGT GATGTGATCT TGCAGGTGGC ACAGCAGCAG
ATTACCAATG CCGCCGACTT GCAGAAGCTG GTGGCTGCCT TGCCGGCGGG CCAGCCGATC
CCGGTGCTGG TGCGACGTGG TGAGGGGAGT TTCTATCTGG TGCTTTCGCT GCCGCATTGA
 
Protein sequence
MALCMGLGLS IGAMTPAWAD SGASGQALVG LPDFTPIVKQ YGPAVVNIST TETRVARGVT 
SPFPPNSPLN QFFAPFFGAP GQPGAPGGGA GQKYQVQSLG SGFVISSDGY IVTAAHVVKG
AQKIIVSLTN HHQYAAHLVG LSARMDVALL KIDAKNLPVV QIGDSSKLEV GQWVLAVGSP
FGFENSVTQG VISATSRPLP DDPYIPFVQT DVPINPGNSG GPLFNMRGQV IGINDQIYTN
SGGYMGLSFS IPINVAMDAV KQLKLHQKVH FGWLGVMIQD VSMDLAKSFH MKEPVGALVS
QVVPDGPAAK AGLRPGDVIV SFDGQAIYNS GQLPPLVGVL PAGFKAKLGV IRDGKPMSLN
IVVESLPGNL ENTVESAASG GPAQEGEVKR LNVQVGPLTA EARKQLHVNT GVLVLGVGVG
PAAEAGIRPG DVILQVAQQQ ITNAADLQKL VAALPAGQPI PVLVRRGEGS FYLVLSLPH