| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0972 |
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| Symbol | pilC |
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| ID | 7134811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 891511 |
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| End bp | 892770 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643529370 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | YP_002425446 |
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| Protein GI | 218665636 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.910627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACAG CCTTGGGCAA AGACAAGAAA TCCGCACTCC GCGAGGCAAA AACCTACGAC
TTTACGTGGG AGGCGACCGC GCCCGGCGGG AGCGAAAAGA AAAAGGGCGA GATGAACGCC
GTCTCCGCCA ACGCCGTGCG CTCCAACCTG CGCCGCATGG GACTGATGCC GACCGTAGTG
CGCAAAGCGC CGCAGCCTCT CTTCGGTGAA AAAGGGGTCA AGGAAGCGCA ACTAGTGGTG
ATGGTCCGCC AGCTCTCCAC CATGATCAAC GCCGGTGTGC CCATCGTGCA GTCTTTCGAA
CTGCTGGTAT CCGCCACCTC CGGCGCGGGC ATGAAAAAAC TGCTCAAGGG GATTCTCAAG
CACCTGAAAG AAGGTGAATC TCTGTCGCAG GCCATGGCCC ACTTCCCCAA ATATTTCGAC
CGCCTTTTCG TATCCCTGGT CGCCGCCGGT GAGCAGGGGG GCATCCTCGA CACCATCCTC
CTGCGCCTGG CCGAATATCG CGAAAAGACC CTGGCGCTGA ACAAAAAGGT CAAGTCGGCC
ATGTTCTACC CGGCCGCCAT CATCACCGTC ATGGTCGTGG TCGTGGTGAT CCTGATGATT
TTCGTCATCC CGGTATTCTC ACAGCTCTTC AGCAGTTTTG GTGCCACTCT GCCGCTGCTG
ACGCAGGTCG TCATCAACAT CTCCGACTGG ATGAAAAGTC ACTGGTACAT CGTGGTGCTC
GTACCTATCG CCTCGGTATG GCTCTTTATC TACGCCTACA AGCGCAACCT GTCCTTCAAA
ACCGTCATAG ACCGCTTCTC CCTGAAAATC CCGGTGCTCG GCGATATCCT GCTGAAGGGT
GCCGTGGCGC GCTTCATGCG TACCCTGTCC ACCATGCAGG GGGCAGGCGT GCCCATCATG
GAAGCCCTGG GAACACTTTC CAAAGTGTCC GGTAACGTCA TCATCGAACG CAGCGTCCTG
GCTGCCCGTG ACGACGTCGC CACCGGCGGG CGCATCACCA CCCAACTGAA AGCCGACGGC
GTCTTTCCCA TCATGGCCAC CCAGATGCTC GCCATCGGTG AGGAAACCGG CGCCATCGAA
GTCATGTCCG GCAAAGTCGC CGACTTTTAC GAGAACGAGG TCGAAGAAGC GGTCAGTCGC
CTCTCCACCC TCATGGAGCC CATGATCATG GTGGTGCTCG GCATCATCGT CGGCACCCTG
GTCGTCGCCA TGTACCTGCC GATCTTCAAG ATGGGCGCGG TGGTGACGCA TGGGGGGTGA
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| Protein sequence | MATALGKDKK SALREAKTYD FTWEATAPGG SEKKKGEMNA VSANAVRSNL RRMGLMPTVV
RKAPQPLFGE KGVKEAQLVV MVRQLSTMIN AGVPIVQSFE LLVSATSGAG MKKLLKGILK
HLKEGESLSQ AMAHFPKYFD RLFVSLVAAG EQGGILDTIL LRLAEYREKT LALNKKVKSA
MFYPAAIITV MVVVVVILMI FVIPVFSQLF SSFGATLPLL TQVVINISDW MKSHWYIVVL
VPIASVWLFI YAYKRNLSFK TVIDRFSLKI PVLGDILLKG AVARFMRTLS TMQGAGVPIM
EALGTLSKVS GNVIIERSVL AARDDVATGG RITTQLKADG VFPIMATQML AIGEETGAIE
VMSGKVADFY ENEVEEAVSR LSTLMEPMIM VVLGIIVGTL VVAMYLPIFK MGAVVTHGG
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