Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_0957 |
Symbol | |
ID | 7137032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 873727 |
End bp | 875082 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643529355 |
Product | sigma-54 dependent transcriptional regulator |
Protein accession | YP_002425431 |
Protein GI | 218667928 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.241897 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGATT TGCTCAGGCA GTTGCGGGCG GAAATGACAT CGTTGCTGGA CTGTTTCAGC GCCCCGGCCG TGCTGCTGTG TGCAGATTAC TCCGTTCTCG CCGCCAACCA GGCTTATCGG CGGGTCTTCG GCGACGGCAA GCCCCTGCAG GGGCGGCGCT GTTACGAAAT CATGGAGGAC GCCGGCTACG CCTGTCGTCA GGGAGGCAAT CATTGCCCAC TCGACGCCTG CCAAAGCTCC GGTACCGGCC AGCATGTGGT GCACAGCAAT ACCTCCGGAA ACGCGCAGAT CGATCTCTAC CCTATCCGTA ATGATAGCGC TAAAGTTGTC TACTTTCTTG AACTGCTGAC CCTGGCGCCG CAATTGACGG CGTTGCCCGC CCCCGCCATG GTCGGCAACT CCCCCGCCTG GCGGGACGTG GCCAGGCTTA TCCGCCGGGC GGCGCCCAGT GATGCCGCCG TATTGCTGCT CGGTGAGTCC GGTACGGGTA AGGAACTGGC CGCTGCGGCC GTACATCAGG CCAGTCACTG TCGGAACGGG CCTTTTGTAG CGGTGGATTG TTCCGGGTTG TCGGAAACCC TCTTTGAGAG CGAGCTCTTC GGTCATGAAA AAGGGGCATT TACGGGCGCG CATTCGCGCA AAACCGGTCT GGTGGAGGCG GCCGATGGGG GCACCCTTTT TCTCGACGAA GTCGGTGATA TTCCGCTCAG TCTACAGGTG AAACTTCTGC GCCTGCTGGA AACGGGGCAT TTCCGGCGGG TAGGGGGCGT GGAGCCGATC CGTTCGCAGT TCCGCCTGGT CTCGGCTACT CACCGTCCGC TTGAAAAAAT GGTCGCGGAG GAGCGTTTCC GGCAGGATCT GTATTACCGT CTGAATACAT TTCCGATCAT GCTGCCCGCG CTGCGGGAGC GCCTGGAGGA TGTGCCCTTG CTGGCGGAAG TCATCCTGCA ACGGCTGCCG GTGGCCAGGG GGCTGCACCT TCACGCCGAT ACGCTGGAAC TGCTGCGCCG TTATAACTAC CCCGGCAACA TTCGTGAACT GCGCAACATT CTCGAGCGTG CGGCGCTACT GGCCGACGAT GTCTGGATTC TTCCGGAACA CCTGCCTACA AACCTTCAGT ATTTGTCGGT GCAAGAATCC GGCCCGGCTT CGTCTTTGAC GGGCCGGCAG CCCATACCCG GTGTTGGCGA AATCATTCCA TTGGCGGATC TGGAAGCACA ATACCTGCGC TGGGCGCGGG GAAATTATGG TGGCGATCGC CGCGGCCTGG CGCAGCGCCT GGGGGTAAGC GAGCGAACCT TGTACCGCAA GCTGGACGCA CTGAGGAGTA ATACTGGGCA TGCCGTTGAA TCCTGA
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Protein sequence | MTDLLRQLRA EMTSLLDCFS APAVLLCADY SVLAANQAYR RVFGDGKPLQ GRRCYEIMED AGYACRQGGN HCPLDACQSS GTGQHVVHSN TSGNAQIDLY PIRNDSAKVV YFLELLTLAP QLTALPAPAM VGNSPAWRDV ARLIRRAAPS DAAVLLLGES GTGKELAAAA VHQASHCRNG PFVAVDCSGL SETLFESELF GHEKGAFTGA HSRKTGLVEA ADGGTLFLDE VGDIPLSLQV KLLRLLETGH FRRVGGVEPI RSQFRLVSAT HRPLEKMVAE ERFRQDLYYR LNTFPIMLPA LRERLEDVPL LAEVILQRLP VARGLHLHAD TLELLRRYNY PGNIRELRNI LERAALLADD VWILPEHLPT NLQYLSVQES GPASSLTGRQ PIPGVGEIIP LADLEAQYLR WARGNYGGDR RGLAQRLGVS ERTLYRKLDA LRSNTGHAVE S
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