| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0939 |
|---|
| Symbol | hoxU |
|---|
| ID | 7136162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 853067 |
|---|
| End bp | 853897 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643529338 |
|---|
| Product | [NiFe] hydrogenase, gamma subunit, putative |
|---|
| Protein accession | YP_002425414 |
|---|
| Protein GI | 218667061 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0543] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATC CTTACCTTCC CCACGAGGTC GAGGTCCTGG AGCGCGTTCA GGAATCCCCC
ACCATCTTCA CCCTGCGCCT CGCCTTCACC GAGCCGGAAA TGCAGGCCCG CTATCGCTTT
CAGCCGGGCC AGTTCAACAT GATTTATCTT TATGGGGTGG GCGAGGTGCC CATTTCCATC
GTCTCCGACC CAGAAGATGA GCACCTCATC GATCATACCA TCCGTGCCGT GGGCCGGGTC
ACCCAGGGGC TGGCGCGCCT GGGGAAGGGC GCCCGCCTGG GCCTGCGCGG ACCTTACGGC
CGGGGCTGGC CTCTGAAACT GGCCGAAGGC AGGGACATCG TGCTCCTCAC CGGGGGGCTG
GGCTGCGCGC CGGTGGTTTC GGTCATCCAC TACATCCTGC GGCGGCGGGA ACGCTTCGGG
CGGCTCACCA TCCTGCAAGG GGTCAAGCAT ACCGACGACC TCATCTGGCG CGCCCAGTAT
GAAGCCTGGA GTCGGCTGCC CGATGTGCAG GTGGGGCTGG CGGCGGACGT GGGCAGCCCC
GGCTGGTTCG GACAGGTGGG GCCGGTAACG GTCCTCTTCG ACCGCGTGCA GTTCGATCCC
GGTGCGCTGA TGATGATGTG CGGCCCCGAG CCCATGATGC GGGCGGCCGT GCAGGAGCTG
CTGCGGCGCG GCGTGGCGGA GGAGGATTTG TGGCTCGGCA TGGAGCGCAG CATGCACTGC
GCCATCGGTC ATTGCGGCCA TTGTCAGATG GGGGGGCACT TCGTCTGCCG GGATGGCCCG
GTCTTCCCCT ACCCGGAGAT CCAGGCCCTG CTGGGCGAGC GAGGATTTTG A
|
|---|
| Protein sequence | MSDPYLPHEV EVLERVQESP TIFTLRLAFT EPEMQARYRF QPGQFNMIYL YGVGEVPISI
VSDPEDEHLI DHTIRAVGRV TQGLARLGKG ARLGLRGPYG RGWPLKLAEG RDIVLLTGGL
GCAPVVSVIH YILRRRERFG RLTILQGVKH TDDLIWRAQY EAWSRLPDVQ VGLAADVGSP
GWFGQVGPVT VLFDRVQFDP GALMMMCGPE PMMRAAVQEL LRRGVAEEDL WLGMERSMHC
AIGHCGHCQM GGHFVCRDGP VFPYPEIQAL LGERGF
|
|---|
| |