Gene AFE_0575 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0575 
Symbol 
ID7134181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp513010 
End bp514344 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content60% 
IMG OID643528982 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_002425067 
Protein GI218665798 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGCAG ATCGTCTATC CCCACGTCTT TCGCTTCTCA TGGTGACATT GATTCTGGGA 
ACGACGCCCG CCTGGGCGGA AAGCCTCGTT GAGGCCTATC AGCAGGCGTA CCGGACCGAC
CCCGTCCTGG CGCAGGCTCG CGCCGAACTG GCGGCTCAGA TGCAGGACAA GCCCCTGGCC
CGTTCCGCCC TGCTCCCTCA TGTGGGTGCC GGTGCTGGGG TTGGCTTCAA CACGGCCGAC
ATCACCGGCT TTGGTGCGGA ACCCATCAAT CGCGCGTACC TCTCGGACAG CTACAGCGTC
AATATTACCC AATCCGTTTT TGATGGTCAG GCATGGACGG CGCTCAGGCA GGCCGATACC
AAAATTCAGG CCAGCGCAGC GGCGCTCACC TATACCGAGC AACAACTGGC TTTGCAGGTG
GCTCAGGCCT ACTTCGGCGT ACTGGAGGCC CAAGCCCAGA ACTACGTTGC CGAAAAACAG
AAATCGCTGT TCGAAAGCAT TTACAAACAG ACGGACGCCG CACTGAAGAT CGGCACCGGA
GATATCATTG CCGTGCGGGA GGCACAAGCC CGCCTTGATG CCGCCAAAGC CGATCTTATC
AAGGCCCGCA ACGGGGTCGC CATTGCCCAA CGCCGCCTGC AACGGCTCAC CCATCATCCC
ATCGGCGTGC TCGACAACCT GGGGCATTAT GTGGCCATGG GGCCTCAGCC CGACGATATG
ACCAGTTGGG TGCAGAGCGC CGTCAAAGAC CAGCCGCTCA TGCATCAGGC GGAGGCACAG
TTACAAACCG CGCAGGATCA GGTCGAATAT AACCGCCGTG CGCGCTGGCC GGTGGTGGAT
CTTCAGGGTA TCGCACAACA CTCCCTGGGT AGTCCTTTTC CCGGTATGGC CATCAATCAG
GCCGGTGTGA GCCTCAACCT ATCCGTACCC TTCTATCAGG GCGGACACAC CTCTGCCTCC
GTACAGCAGG CACAGGCGCA GACCATTGCC AGTGTTGATC ACGTCGCCAA TGTCCGCGAC
GAAGTCACGC TCAATACCCA GACCGCCTTC CTCAATCTGA AGGACAGCGT GGCCCAACTG
CACGCCGCCC GGGAGAGCGT CGCCTCGGCC AAGGTTTCCC TGGAAGGTAC GCGCAAGGGC
TATGAGGTAG GTACCCGCTC CATCATCGAC CTGCTGCAAA CCGCCACGGA CTACATCCGC
GCCGAGCAGG ACTACAATGT GGCGTTCTAT AACCAGATCA TAGCGCGCAT ACAGCTCAAG
GCCGCATCCG GCCAGATCAA CATGGCGGAC CTGGAAGCCA TAAATGCCTT GCTGGACAAG
GGTGCAAACC CGTAG
 
Protein sequence
MRADRLSPRL SLLMVTLILG TTPAWAESLV EAYQQAYRTD PVLAQARAEL AAQMQDKPLA 
RSALLPHVGA GAGVGFNTAD ITGFGAEPIN RAYLSDSYSV NITQSVFDGQ AWTALRQADT
KIQASAAALT YTEQQLALQV AQAYFGVLEA QAQNYVAEKQ KSLFESIYKQ TDAALKIGTG
DIIAVREAQA RLDAAKADLI KARNGVAIAQ RRLQRLTHHP IGVLDNLGHY VAMGPQPDDM
TSWVQSAVKD QPLMHQAEAQ LQTAQDQVEY NRRARWPVVD LQGIAQHSLG SPFPGMAINQ
AGVSLNLSVP FYQGGHTSAS VQQAQAQTIA SVDHVANVRD EVTLNTQTAF LNLKDSVAQL
HAARESVASA KVSLEGTRKG YEVGTRSIID LLQTATDYIR AEQDYNVAFY NQIIARIQLK
AASGQINMAD LEAINALLDK GANP