Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_0575 |
Symbol | |
ID | 7134181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 513010 |
End bp | 514344 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643528982 |
Product | type I secretion outer membrane protein, TolC family |
Protein accession | YP_002425067 |
Protein GI | 218665798 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCGCAG ATCGTCTATC CCCACGTCTT TCGCTTCTCA TGGTGACATT GATTCTGGGA ACGACGCCCG CCTGGGCGGA AAGCCTCGTT GAGGCCTATC AGCAGGCGTA CCGGACCGAC CCCGTCCTGG CGCAGGCTCG CGCCGAACTG GCGGCTCAGA TGCAGGACAA GCCCCTGGCC CGTTCCGCCC TGCTCCCTCA TGTGGGTGCC GGTGCTGGGG TTGGCTTCAA CACGGCCGAC ATCACCGGCT TTGGTGCGGA ACCCATCAAT CGCGCGTACC TCTCGGACAG CTACAGCGTC AATATTACCC AATCCGTTTT TGATGGTCAG GCATGGACGG CGCTCAGGCA GGCCGATACC AAAATTCAGG CCAGCGCAGC GGCGCTCACC TATACCGAGC AACAACTGGC TTTGCAGGTG GCTCAGGCCT ACTTCGGCGT ACTGGAGGCC CAAGCCCAGA ACTACGTTGC CGAAAAACAG AAATCGCTGT TCGAAAGCAT TTACAAACAG ACGGACGCCG CACTGAAGAT CGGCACCGGA GATATCATTG CCGTGCGGGA GGCACAAGCC CGCCTTGATG CCGCCAAAGC CGATCTTATC AAGGCCCGCA ACGGGGTCGC CATTGCCCAA CGCCGCCTGC AACGGCTCAC CCATCATCCC ATCGGCGTGC TCGACAACCT GGGGCATTAT GTGGCCATGG GGCCTCAGCC CGACGATATG ACCAGTTGGG TGCAGAGCGC CGTCAAAGAC CAGCCGCTCA TGCATCAGGC GGAGGCACAG TTACAAACCG CGCAGGATCA GGTCGAATAT AACCGCCGTG CGCGCTGGCC GGTGGTGGAT CTTCAGGGTA TCGCACAACA CTCCCTGGGT AGTCCTTTTC CCGGTATGGC CATCAATCAG GCCGGTGTGA GCCTCAACCT ATCCGTACCC TTCTATCAGG GCGGACACAC CTCTGCCTCC GTACAGCAGG CACAGGCGCA GACCATTGCC AGTGTTGATC ACGTCGCCAA TGTCCGCGAC GAAGTCACGC TCAATACCCA GACCGCCTTC CTCAATCTGA AGGACAGCGT GGCCCAACTG CACGCCGCCC GGGAGAGCGT CGCCTCGGCC AAGGTTTCCC TGGAAGGTAC GCGCAAGGGC TATGAGGTAG GTACCCGCTC CATCATCGAC CTGCTGCAAA CCGCCACGGA CTACATCCGC GCCGAGCAGG ACTACAATGT GGCGTTCTAT AACCAGATCA TAGCGCGCAT ACAGCTCAAG GCCGCATCCG GCCAGATCAA CATGGCGGAC CTGGAAGCCA TAAATGCCTT GCTGGACAAG GGTGCAAACC CGTAG
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Protein sequence | MRADRLSPRL SLLMVTLILG TTPAWAESLV EAYQQAYRTD PVLAQARAEL AAQMQDKPLA RSALLPHVGA GAGVGFNTAD ITGFGAEPIN RAYLSDSYSV NITQSVFDGQ AWTALRQADT KIQASAAALT YTEQQLALQV AQAYFGVLEA QAQNYVAEKQ KSLFESIYKQ TDAALKIGTG DIIAVREAQA RLDAAKADLI KARNGVAIAQ RRLQRLTHHP IGVLDNLGHY VAMGPQPDDM TSWVQSAVKD QPLMHQAEAQ LQTAQDQVEY NRRARWPVVD LQGIAQHSLG SPFPGMAINQ AGVSLNLSVP FYQGGHTSAS VQQAQAQTIA SVDHVANVRD EVTLNTQTAF LNLKDSVAQL HAARESVASA KVSLEGTRKG YEVGTRSIID LLQTATDYIR AEQDYNVAFY NQIIARIQLK AASGQINMAD LEAINALLDK GANP
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