| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0481 |
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| Symbol | lolC |
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| ID | 7135372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 421944 |
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| End bp | 423188 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643528892 |
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| Product | lipoprotein releasing system transmembrane protein LolC |
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| Protein accession | YP_002424977 |
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| Protein GI | 218667228 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTTTT ACGAGCTCTG GATCGGGCTG CGTTACACCC GCGCCAAGCG CCGCAATCAC
TTCATTTCCT TCATTACCGG CACGGCGATC ATGGGCATGG TCATCGGGGT GGCCGCGCTC
ATCGCGGTCA TGGCGGTGAT GAATGGTTTT GACCATACCC TGCGTTCGCG GATTCTGGCG
GTGACCTCCG ATGTCATCAT TCAGGGCAAC GGGGTACCGG TACTGGACTG GCCGACGGCG
GTGAAGCGCC TTTCTACGGT TCCCGGTGTG ACCGGAGTGG CACCCTATGT TCAGGCGCAG
GCCATGCTCT CCCACGAAGG GCTGGTCAGT GGCGCGGTGA TCGAGGGCAT CGATCCGGCG
TTGGAGAACC GCGTCAACAA GCTCAACCAA GACATGAAAA TGGGCGAGTT GCAGTCCCTG
CAGACTCACC CCTGGAGTAT CGTCCTCGGA CGAGCCCTCG CGCGGCAACT GGGCGTGACC
GTAGGCGACA AGATTACCCT GATCTCGCCG CAGGGGGGCG TGACCCCACT GGGGGTAACC
CCCGCCCTGC GCCAGTTCAC GGTGGTGGGG CTCTTTTCCG TTGGCATTTA CGCCTACGAC
AGCGGCATGG CCTATATCAA TCTGGGCGAT GCGCAGCGGC TCTACGGGCT GAACCAGGGC
GTGACGGGCC TGCGCATGCA GATCAAGGAT CCCTTTACCG CCCCGGCCTT CGCTGCCCAT
CTGCAACAAC AGCTTGGCGC CGCCTTTTAT ATCCAGGACT GGACCCAGAC CCACGAGAAC
TTCTTCAAGG CCCTGAGCAT GGAGAAACTG GTGATGTTCG TGATCCTGTC GCTGATCATC
GCCGTCGCCG CCTTCAATAT CGTGGCGACG CTGGTGATGG TGGTCACCGA TAAGGAAACG
GATATCGCCA TCCTTCGCAC CATCGGCGTG ACGCCACGCA GTATCATGCT GATTTTTATG
GTTCAGGGCG GGATCATCGG ACTCTTTGGC ACGCTGCTCG GTGTCTTCTT CGGGGTGTTG
CTGGCGTTGA ATATTCCGAC CCTGGTACCG GCCATCGAGC ACTTGTTTCA CGTCCAATTC
ATCTCGCCGG AGGTTTATTC CATCAGCCAG TTGCCCTCCA AGCTGGAGCC CTGGGATGTG
ATCCATGTGG CCATTGCCGC GCTCATCATG AGCTGGATAG CGACGTTGTA TCCCTCCTGG
CGCGCCTCCC GCGTCGCCCC TGCCGAGGCC CTGCGTTATG AGTGA
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| Protein sequence | MRFYELWIGL RYTRAKRRNH FISFITGTAI MGMVIGVAAL IAVMAVMNGF DHTLRSRILA
VTSDVIIQGN GVPVLDWPTA VKRLSTVPGV TGVAPYVQAQ AMLSHEGLVS GAVIEGIDPA
LENRVNKLNQ DMKMGELQSL QTHPWSIVLG RALARQLGVT VGDKITLISP QGGVTPLGVT
PALRQFTVVG LFSVGIYAYD SGMAYINLGD AQRLYGLNQG VTGLRMQIKD PFTAPAFAAH
LQQQLGAAFY IQDWTQTHEN FFKALSMEKL VMFVILSLII AVAAFNIVAT LVMVVTDKET
DIAILRTIGV TPRSIMLIFM VQGGIIGLFG TLLGVFFGVL LALNIPTLVP AIEHLFHVQF
ISPEVYSISQ LPSKLEPWDV IHVAIAALIM SWIATLYPSW RASRVAPAEA LRYE
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