Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_0431 |
Symbol | rluD |
ID | 7136318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 374824 |
End bp | 375783 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643528842 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_002424927 |
Protein GI | 218667498 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGACG ATAGTACGGG ACTTCCCATG ATTTTGCCAG AGGAGCAGGC CGGCGAGCGC CTCGACACGG TGTTGAGCCA GTTGCTGCCG GAAACCAGCC GCAGTCGTAT CCAGGCCCTG CTGCGCGATG GCCGGATTCT GGTGGATGGC ACGCCCGAAA AGCCCAGTGC GCGGGTGCGC GGCGGTGAGC AGGTGATGGT CGACTGGCCG CAGATCGAAC CCAGCAACTG GCTGGCCGAG GGCCTGCCCC TGCATATTCT GCACGAAGAC GCGGATATTC TTGTTTTGCA CAAGCCGGCG GGGCAGCTTA CCCACCCCGG CGCCGGTCAT GCCGACGGCA CGCTGGTCAA CGGCGTGCTG GCCCATGTGC CGGAGAACGC CTATCTGCCC CGCGGCGGAA TCGTCCATCG GCTGGACAAG GACACGACCG GTCTGCTGGT GGTGGCAAAA ACGGAAATGG CGCGGCAGTC GCTGATCGAT CAGCTCGGTG ACCATACCAT GCACCGCGAG TATCTCGCGC TGGTGACGGG AGCGATGACG GGAGGTGGCC GGGTGGACGC GCCCATCGGC CGGCACGCTC AGGATCGTCT GCGGATGACG GTGCGTGATG ACGGCCGACC GGCGCAGACC GACTATCGGC TGGTGGAGCG CTTCCCCCGT CACAGCTATC TGCGCCTGCG CCTGGCGACG GGCCGCACCC ATCAGATTCG TGTGCATATG ACGCATATCG GCCACCCGCT GGTGGGCGAC CCGGTCTATG GAGGGCGGAT GACGGTGCCG AAAGGACTGG ATGAGGCTGG GCTGGCCCGC TGGCGGCAGT TCCGTCGCCA GGCGTTGCAT GCCTGGCGCC TGCGTCTTTA CCATCCCGCA AGCGGAGAAC TGATGACCTG GGAAAGCCCG CTGCCCGACG ACATGACCGA ATTGCTGGCG CTGCTGCGCC ATGCGCGTGA TGGTGACTGA
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Protein sequence | MSDDSTGLPM ILPEEQAGER LDTVLSQLLP ETSRSRIQAL LRDGRILVDG TPEKPSARVR GGEQVMVDWP QIEPSNWLAE GLPLHILHED ADILVLHKPA GQLTHPGAGH ADGTLVNGVL AHVPENAYLP RGGIVHRLDK DTTGLLVVAK TEMARQSLID QLGDHTMHRE YLALVTGAMT GGGRVDAPIG RHAQDRLRMT VRDDGRPAQT DYRLVERFPR HSYLRLRLAT GRTHQIRVHM THIGHPLVGD PVYGGRMTVP KGLDEAGLAR WRQFRRQALH AWRLRLYHPA SGELMTWESP LPDDMTELLA LLRHARDGD
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