Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | A9601_17041 |
Symbol | rne |
ID | 4718435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. AS9601 |
Kingdom | Bacteria |
Replicon accession | NC_008816 |
Strand | + |
Start bp | 1448089 |
End bp | 1449909 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 640079431 |
Product | ribonuclease E/G |
Protein accession | YP_001010094 |
Protein GI | 123969236 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.925066 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTCAGC AAATTATCAT CGCTGAGCAG GCTCGAATTG CAGCACTACT CACAGATGAT CGAGTTGATG AATTAATCGT CGCACAAGGT CAATATCAAA TTGGCGATAT TTTTTTAGGA ACAGTTGAAA ACGTTCTCCC TGGTATTGAT GCAGCTTTCA TAAATATCGG TGAAAGTGAG AAAAATGGAT TCATCCATGT TTCAGATTTA GGTCCACTAA GACTCAAAAA AGGGACATTT GGAATAACGG AATTACTAGA ACCAAAACAA AAAGTCCTAG TGCAGGTAAT AAAGGAACCT ACAGGATCTA AAGGGCCTAG ACTAACCGGG AGCATTTCAA TCCCAGGGAA ATACTTGATA CTACAGCCAT ATGGACAAGG AGTAAATATT TCAAGAAAAA TAAATACAGA AACAGAGCGA AGCCGTTTGA AAGCTCTTGG GGTTTTAATT AAACCACCTA GCACAGGCTT GTTATTTAGA ACAGAGGCTG AAAAGATAAA AGAAGAACTT CTAATTGAAG ATTTAGAACA TTTAATTCAA CAATGGGAAA ATATACTAAA AGTTTCTGAG GCTTCTAATC CGCCAAATTT AATAAAAAGA GATGATGATT TCTCTCTTAA GATCTTAAGA GATTATATTA AAGAATCTAC TAAAAGTTTA ATTATCGATA GTAAATTTTC AGTTATAAGG GCAAAAGATT TTTTAATAAA TTATGAGTCT AATGTAGATA TTGAATTTCA CGATAACAGT TTAAACCAAC ATATTTTGGA GAAGTATGAA ATTAAGAAAA CAATTCAAAA AGCTCTCCAG CCGAGAGTAG ATCTTCCTTC GGGGGGTTAT ATAATTATTG AACCTACTGA AGCTTTAACA GTAATCGACG TAAACTCTGG ATCATTTACC AGATCCGCTA ACTCAAGACA AACCGTTTTG TGGACGAACT GCGAAGCAGC AGTTGAAATC TCAAGACAAA TGAAATTAAG AAATATCGGT GGAGTTATAG TAGTTGATTT TATTGATATG GAATCTAGAA GAGATCAATT TCAGTTACTT GAACATTTTA CCTCAGCAAT AAAAGATGAT TCTGCTAGGC CTCAAATAGC TCAGCTTACT GAATTAGGTT TAGTGGAGTT AACAAGAAAA AGACAAGGGC AAAATATATA TGAACTATTC GGCAAAAAAT GTTCTTCATG CGACGGTACA GGACATGTAG AAAATATATT AAATCACGAA ATTTCTTACT TAAAAATTAA AAATGTTGAA AATAAATCTA ATCAATCAAA CAATTTAACA TCTTTAGATA TAGTTACTTC TCAATCAACT GATGAGCAAG AAAAAATAAT TGACAAGGAA TTACTGAATT CCAAAGACCT AAGTAAAGAA AATTCTTCGA ATAAAAAAGA AAATGAAAAT GATAATTTAA ACCAATCAAA TTCAAAAGAA AAAAATATAA TAACAGTTGA TCTTACTAAT GAAGAAAAAA TTGTTTTCAG TGAATTGGGT ATAAATCCAC TTATAAAGTT AGGTAAAGAA TATCTAACTA GCAATAATTT TGTGCGATTA AAAGAGAGTA ATAAGGAAAC GGAAAAACCC TTAGATAATA AAAAAGCAAC ATCAAAAAAA ACTAAAAAAA TCTCACAATC GGGAGAAGAA AAGATTCAAA TTAAAATTGA AGCAAATGCA AGTTCTAAAG ATAAAACTTC AAATAAAACT AATGAAAGTA ATGAAGTTGT ATCTACAGAT AAAAAGGATC AAATTGAACT TACAGATGAG CTAAACAATG CAAGAAAAAA AAGAAGAAGA TCTTCAGCAA GCATTGAATA A
|
Protein sequence | MSQQIIIAEQ ARIAALLTDD RVDELIVAQG QYQIGDIFLG TVENVLPGID AAFINIGESE KNGFIHVSDL GPLRLKKGTF GITELLEPKQ KVLVQVIKEP TGSKGPRLTG SISIPGKYLI LQPYGQGVNI SRKINTETER SRLKALGVLI KPPSTGLLFR TEAEKIKEEL LIEDLEHLIQ QWENILKVSE ASNPPNLIKR DDDFSLKILR DYIKESTKSL IIDSKFSVIR AKDFLINYES NVDIEFHDNS LNQHILEKYE IKKTIQKALQ PRVDLPSGGY IIIEPTEALT VIDVNSGSFT RSANSRQTVL WTNCEAAVEI SRQMKLRNIG GVIVVDFIDM ESRRDQFQLL EHFTSAIKDD SARPQIAQLT ELGLVELTRK RQGQNIYELF GKKCSSCDGT GHVENILNHE ISYLKIKNVE NKSNQSNNLT SLDIVTSQST DEQEKIIDKE LLNSKDLSKE NSSNKKENEN DNLNQSNSKE KNIITVDLTN EEKIVFSELG INPLIKLGKE YLTSNNFVRL KESNKETEKP LDNKKATSKK TKKISQSGEE KIQIKIEANA SSKDKTSNKT NESNEVVSTD KKDQIELTDE LNNARKKRRR SSASIE
|
| |