| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A2cp1_4487 |
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| Symbol | |
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| ID | 7297834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011891 |
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| Strand | + |
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| Start bp | 4998821 |
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| End bp | 5002522 |
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| Gene Length | 3702 bp |
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| Protein Length | 1233 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 643597293 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002494870 |
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| Protein GI | 220919566 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.751357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCAG CATCAGGAGA GACCCCGGGC GCGAGCGCGC GCGATCGCGT GCGCCGCGCC
CTCGAGGAGA AGCGCCGCGC CGACGTCACC GGCCTGGTCG GGGCCGCGCG CGGCCTCCTC
ATCCGCGACC TGCTCGCCCC GGGTCCGGGC CGCGCCCGCT CGGTGCTGGC GGTGGCGGCG
GACGAGGAGG AGGCGGACGC GCTCGCGCGC GACCTCGCCT TCTTCCTGGG CGAGGGGGCC
GTGCTCCGCG TCCCCGCCGA CGCGGTGCTC CCCTACGACG ACCTCTCACC CGACCGCGGC
GTGGAGATGG AGCGGCTCGC CGCGCTGGCG CGCCTGCACC TCGCCCCGGA GCAGGCGAAG
GCGGTGGTGG TCTCGGCCCG CGCGCTGGCG CGGCGCACCG TGCCGCGCCG GGTGTTCGAG
GCCGGCTCGG ATCTGCTCGG CAAGGGCGTC GAGGTGGATC GCGAGGCGCT CGCCGCGAAG
CTCGTGCTGC TCGGCTTCGC CCGCACGCCG CTCGTGGAGG ACCCGGGCAC GTTCGCGGTG
CGCGGCGGCA TCGTGGACCT GTGGAGCCCC GCCGACCCGA AGCCGGTCCG GCTCGAGTTC
TTCGGCGACG AGATCGAGAG CTGCCGCGCG TTCGACCCGT CCACCCAGCG CAGCGAGGGC
GACGTGGAGG AGGTGCTGCT CTGCCCCTCG CGCGAGGCGC TCTTCACCGA GGAGGGCAAG
GAGGCCGCCA AGACCGCGGT GCGCGAGGCC GCCGAGCGGG TGAACCGGCC CACCTCGCGC
GTGCGCGAGG TGCTCGACGC CATCGACGCC GGCACGCCGT TCTTCGGCCT CGAGGCGCTC
CTGCCCGGCT TCCACCCGGG CGGCCTCGGC ACGCTGTTCG ACTACCTGCC GGCCGGCGCC
GCGGTCTACG TGGACGGGGT GGCCGCGGTG GAGGACGCGC TCGCGGAGCT CGACGAGGCG
CTGGCCCGCG AGCACGCCGC CGCGCTGAAG CGCGAGGAGC TGGTGCTGCC GCCGGCGGCG
CACTTCCTCC CCGGCGCCGA GGCCCGCGCG CGCGCGCTGG CGCTGCCGAC GGTGGTCCGG
CACCGGGTCT GGCTCGGCAC CGAGGAGCCC ATCCGCTACG CGCTCGAGGA GACCGCCGGC
ATCCGCGGGG AGATCGAGGG CGCGCACGGC GAGGAGGGCG CGCTCGCCCC GCTCACCCGG
CGCCTGGAGG ACTGGCGCAA GCGCGGGATC GCGGCGGTGG TGGCGGCCGG GACCGCCTCG
GCCTCCGAGC GGCTCCGCCG CCTGCTCGAG GACCGGCGCC AGCAGTCGCG CGTCCACACC
GGCCCGCCCG GCGCGCCCCG CGAGATCTAC GACCCGGCGG TGCACGTGCA CGTCTTCGCC
GGCGAGATCT CGGCCGGCTT CGTGGACGCC GGCGCCGGCC TGGCGGTCGT CTCCGACGAG
GAGATCTTCG GCCGCCGCGT GCGCAAGAAG GCGCGCCGCG CCGCGGAGGA GAACGCGTTC
GCCGCGGCGT TCCGCGAGCT GAACGAGGGC GACCTGGTGG TGCACGTCGA GCACGGCATC
GCCCGCTACC TCGGCCTCAC CAAGATGCAG ATCCGCGGGG TGGAGGGCGA CTTCCTCGTC
CTCGCCTACG ACGGCGCCGA CCGGCTCTAC CTGCCGGTCG CGAAGCTGCG GCAGGTGCAG
AAGTTCACCG GCGCGTCGCC CGAGACGATC CGGCTCGACA AGCTGGGCGG CAGCTCCTTC
GCGCTCCGCA AGGCGCGCGT GAAGGAGCAG CTCCTCAAGA TGGCCGCCGA GCTGCTCGAC
ATCTACGCCG CCAGGGCTGC CCACCCGGGC TTCGCGTACC CGGAGCCGGA CCAGCTGTTC
CGCGAGTTCG AGGCGGAGTT TCCCTGGGAG GAGACGCCCG ACCAGGCGAA GGCCATCGAG
GACGTGGTCC GCGACATGCG CAAGGGCCGC CAGGGCCCGG CCGCGGCAGC GCCCATGGAC
CGGCTGGTCT GCGGCGACGT GGGCTACGGC AAGACCGAGG TGGCGATGCG CGCCGCCATG
CTGGCGGTGC TGGCGAAGAA GCAGGTGGCG GTGCTCGTCC CCACCACCGT GCTCGCGGCG
CAGCACGAGC GCACCTTCCG CGAGCGGTTC AAGGGCTATC CGGTGCGCAT CGAGGCGGTC
TCGCGCATGC GCACCTCCGA CGAGGTGAAG CACGCGCTGA AGGCCGCCGC CGACGGCAAG
GTGGACATCC TCGTCGGCAC GCACCGGCTG CTCGCCGCCG ACGTCTCGTT CAAGGACCTG
GGCCTGGTGG TGGTGGACGA GGAGCAGCGC TTCGGGGTCG CGCACAAGGA GCGCCTGAAG
AAGCTGCGCA GGCTCGTCGA CGTGCTCACG CTCACCGCCA CGCCCATCCC CCGCACCCTG
CACATGAGCC TCGCCGGCGT GCGCGACCTC TCCATCATCG CGACGCCGCC CGAGGACCGC
CGCGCCATCC GCACGTTCGT GATGAAGTTC GACCCGGCCG CGGTGAAGGA GGCGATCGAG
ACCGAGCTGA AGCGCGGCGG GCAGGTGTTC TTCGTCCACA ACCGCGTCCG CTCGATCCAC
GCCATGCAGC GCTTCCTGAA CGAGCTCGTG CCGAAGGCGC GGGTGGGCGT CGCGCACGGC
CAGATGGGCG AGGGGAAGCT CGAGCACGTC ATGACGCAGT TCGTGGACAA GGAGCTCGAC
GTGCTCCTCG CCACCAGCAT CATCGAGTCC GGCCTCGACA TCCCCAGCGC GAACACCATC
ATCGTGAACC GCGCGGATCA CTTCGGCCTG GCGCAGCTCT ACCAGATCCG CGGCCGCGTC
GGCCGGAGCC GCGAGCGCGC CTACGCGTAC CTGCTCGTGC CGGCGCGGCG CCCGGTCACG
AAGGACGCGC AGAAGCGGCT CGAGGTGCTG CAGCGCTTCA GCGAGCTCGG CGCGGGCTTC
AAGATCGCGA GCCACGACCT CGAGCTCCGC GGCGCCGGCA ACCTGCTCGG CAAGGACCAG
TCCGGCCAGA TCGAGGCGGT GGGCTTCGAG CTGTACCAGG AGCTGCTCGA CGAGGCGGTG
CGCGAGCTGA AGGGCGAGGC GCCGCGCGAG GAGATCGACC CGGACGTGCA GCTCCCGGTG
CCGGCGTTCA TCCCCGACCC GTACATGCCG GACGTCCACC AGCGGCTGTT CTTCTACAAG
CGGCTGGCGC AGGCCTCCAC CGACGAGGAC CTCGACGAGG TCCGCGCCGA GATGGTGGAC
CGCTGCGGCG ACCCGCCGGA CGAGGTGGAC GCGCTGTTCG AGGTGATGGC GGTGAAGGTC
CGGCTGCGCG CGCTGCGCAT CCGCGCGCTC GAGACCGGGC CCGGGCGGCT CGTGCTCACG
CTGGGCGAGT CGGCCGCGCT CGACCCGTTC CAGCTCGCGA AGCACGTGCA GGCCTCGGCC
GGCGCGCTCC GGCTCACCCC GGACATGAAG CTCGTGGCGC AGCTCGGCGG GCCGCCCGCC
GCGAAGGCGG CCGCGGCGCG CCCGGCGAAG GGCGCCGCCG TCCGGCAGAG CCCGCGCCAG
GCTGCGGCAC AGCGCCGCGT CGCGGCCGAC GCCGCCCGCA GGGCCCAGCC GCCGCCGGCC
GCGCCGCCGT CGCCGGCGAT GCAGGCCGCG AACGGCCGCG AGCTGCTGCA GGCCGTGCGC
GTGGTGCTCG CCGGGCTGGC GCGCTGCGCG CGCCCGGAGT GA
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| Protein sequence | MTAASGETPG ASARDRVRRA LEEKRRADVT GLVGAARGLL IRDLLAPGPG RARSVLAVAA
DEEEADALAR DLAFFLGEGA VLRVPADAVL PYDDLSPDRG VEMERLAALA RLHLAPEQAK
AVVVSARALA RRTVPRRVFE AGSDLLGKGV EVDREALAAK LVLLGFARTP LVEDPGTFAV
RGGIVDLWSP ADPKPVRLEF FGDEIESCRA FDPSTQRSEG DVEEVLLCPS REALFTEEGK
EAAKTAVREA AERVNRPTSR VREVLDAIDA GTPFFGLEAL LPGFHPGGLG TLFDYLPAGA
AVYVDGVAAV EDALAELDEA LAREHAAALK REELVLPPAA HFLPGAEARA RALALPTVVR
HRVWLGTEEP IRYALEETAG IRGEIEGAHG EEGALAPLTR RLEDWRKRGI AAVVAAGTAS
ASERLRRLLE DRRQQSRVHT GPPGAPREIY DPAVHVHVFA GEISAGFVDA GAGLAVVSDE
EIFGRRVRKK ARRAAEENAF AAAFRELNEG DLVVHVEHGI ARYLGLTKMQ IRGVEGDFLV
LAYDGADRLY LPVAKLRQVQ KFTGASPETI RLDKLGGSSF ALRKARVKEQ LLKMAAELLD
IYAARAAHPG FAYPEPDQLF REFEAEFPWE ETPDQAKAIE DVVRDMRKGR QGPAAAAPMD
RLVCGDVGYG KTEVAMRAAM LAVLAKKQVA VLVPTTVLAA QHERTFRERF KGYPVRIEAV
SRMRTSDEVK HALKAAADGK VDILVGTHRL LAADVSFKDL GLVVVDEEQR FGVAHKERLK
KLRRLVDVLT LTATPIPRTL HMSLAGVRDL SIIATPPEDR RAIRTFVMKF DPAAVKEAIE
TELKRGGQVF FVHNRVRSIH AMQRFLNELV PKARVGVAHG QMGEGKLEHV MTQFVDKELD
VLLATSIIES GLDIPSANTI IVNRADHFGL AQLYQIRGRV GRSRERAYAY LLVPARRPVT
KDAQKRLEVL QRFSELGAGF KIASHDLELR GAGNLLGKDQ SGQIEAVGFE LYQELLDEAV
RELKGEAPRE EIDPDVQLPV PAFIPDPYMP DVHQRLFFYK RLAQASTDED LDEVRAEMVD
RCGDPPDEVD ALFEVMAVKV RLRALRIRAL ETGPGRLVLT LGESAALDPF QLAKHVQASA
GALRLTPDMK LVAQLGGPPA AKAAAARPAK GAAVRQSPRQ AAAQRRVAAD AARRAQPPPA
APPSPAMQAA NGRELLQAVR VVLAGLARCA RPE
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