Gene A2cp1_4092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagA2cp1_4092 
Symbol 
ID7297517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaeromyxobacter dehalogenans 2CP-1 
KingdomBacteria 
Replicon accessionNC_011891 
Strand- 
Start bp4575761 
End bp4576870 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content73% 
IMG OID643596899 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_002494476 
Protein GI220919172 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.564648 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGGCGCAT ACGGGCAGGG TGAGGGCGCG ACGCTGGGCG AGCGCCGGAA GACGCGGCAG 
ATCCGCGTCG GCAACGTGCG GATCGGCGGC GACGCGCCCA TCGCGGTGCA GTCGATGACG 
ACCACGCAGA CCGCCGACGC CGCGGCGACG CTGACCCAGA TCCGGGCGCT GGCCGAGGCG 
GGCGCCGACG TGGTGCGCCT GGCCGTGCCG GACCAGGACG CCGCCGCCGC GCTGCCGGAG 
ATCGTGAAGG CCACGCCGGT GCCGCTGGTG GCCGACATCC ACTTCGACTA CCGGCTGGCG 
CTCGCCGCGC TGAAGGCCGG GATGCACGGC ATCCGCCTCA ACCCCGGCAA CATCGGCTCG 
CGCGATCGCG TCCGCGAGGT GGTGAAGGCC GCCCGCGAGC GCATGGTGCC GGTGCGCATC 
GGCGTGAACG CCGGCTCGCT GGAGAAGGAC ATCGTCGAGA AGCACGGCTG GCCCACCGCC 
GCCGGCATGG TGGAGAGCGC CGAGCGCCAC ATCCGCTTCC TCGAGGACGA GGGCTACCGC 
GAGATCAAGG TCTCGCTGAA GGCGCACGAC GTCGCCATGA CCGTGCAGGC GAACCGGCTC 
TTCTCGCGCC AGTTCGACTA CCCGCTCCAC CTCGGCGTCA CCGAGGCCGG CACGCTGCTC 
GCCGGCACGG TGAAGAGCGC CGCGGGGCTG GGCATCCTGC TGGGCGAGGG CATCGGCGAC 
ACCATCCGCA TCTCCCTCAC CGCCGATCCG GTCGAGGAGG TGCGGGTGGC GCGCATGCTG 
CTCACCTCGC TCGGCCTCAA GTTCGGCGGG GCCACGCTCA CCTCCTGCCC CACCTGCGGC 
CGGTGCTCGG TGGACATGAT CCCGGTGGCC GAGCGCGTCG AGCGCCGCCT CGCCACGCTG 
AAGGGCGAGG TGCAGGTGGC GGTGATGGGC TGCGAGGTGA ACGGGCCGGG CGAGGCGGCC 
GCCGCCGACG TCGGGATCGC CTACGGCCAC AACGGCGTGG GGCTGCTGTT CCGCGACGGC 
AAGATCGTGA AGCGCATGAA GGCGGAGGAG CTGGAGGAGG CGCTGGTGGC CGAGGCCATC 
CAGATCTCCG GCCAGCGCGC GCCGAAGTAG
 
Protein sequence
MGAYGQGEGA TLGERRKTRQ IRVGNVRIGG DAPIAVQSMT TTQTADAAAT LTQIRALAEA 
GADVVRLAVP DQDAAAALPE IVKATPVPLV ADIHFDYRLA LAALKAGMHG IRLNPGNIGS 
RDRVREVVKA ARERMVPVRI GVNAGSLEKD IVEKHGWPTA AGMVESAERH IRFLEDEGYR 
EIKVSLKAHD VAMTVQANRL FSRQFDYPLH LGVTEAGTLL AGTVKSAAGL GILLGEGIGD 
TIRISLTADP VEEVRVARML LTSLGLKFGG ATLTSCPTCG RCSVDMIPVA ERVERRLATL 
KGEVQVAVMG CEVNGPGEAA AADVGIAYGH NGVGLLFRDG KIVKRMKAEE LEEALVAEAI 
QISGQRAPK