74 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
PC1_0001  CDS  NC_012917  72  1469  +  1398  chromosomal replication initiation protein  YP_003015600  decreased coverage  0.00156244  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0193  CDS  NC_012917  223071  223928  +  858  glutamate racemase  YP_003015789  decreased coverage  0.00438881  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0252  CDS  NC_012917  296330  297373  +  1044  rod shape-determining protein MreB  YP_003015847  decreased coverage  0.00115776  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0253  CDS  NC_012917  297549  298532  +  984  rod shape-determining protein MreC  YP_003015848  decreased coverage  0.00109654  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0291  CDS  NC_012917  337414  338565  +  1152  AFG1-family ATPase  YP_003015886  decreased coverage  0.00126781  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0293  CDS  NC_012917  339247  339639  +  393  ribosomal protein S9  YP_003015888  decreased coverage  0.000515876  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0389  CDS  NC_012917  443904  445019  +  1116  permease YjgP/YjgQ family protein  YP_003015982  decreased coverage  0.00124488  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0446  CDS  NC_012917  509354  509683  +  330  Z-ring-associated protein  YP_003016038  decreased coverage  0.00725856  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0662  CDS  NC_012917  767770  768480  +  711  two component transcriptional regulator, winged helix family  YP_003016253  decreased coverage  0.00302199  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0663  CDS  NC_012917  768458  769957  +  1500  histidine kinase  YP_003016254  decreased coverage  0.00720978  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0925  CDS  NC_012917  1073547  1074752  -  1206  cysteine sulfinate desulfinase  YP_003016511  decreased coverage  0.002092  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0926  CDS  NC_012917  1074936  1075157  +  222  hypothetical protein  YP_003016512  decreased coverage  0.000581798  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0927  CDS  NC_012917  1075695  1076618  +  924  DNA-binding transcriptional activator GcvA  YP_003016513  decreased coverage  0.00141405  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0934  CDS  NC_012917  1083237  1083587  +  351  hypothetical protein  YP_003016520  decreased coverage  0.000280487  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0935  CDS  NC_012917  1083565  1084365  +  801  tRNA pseudouridine synthase C  YP_003016521  decreased coverage  0.00065013  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_0936  CDS  NC_012917  1084444  1084899  +  456  flavodoxin  YP_003016522  decreased coverage  0.000373319  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1074  CDS  NC_012917  1248454  1248849  +  396  hypothetical protein  YP_003016659  decreased coverage  0.00236568  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1075  CDS  NC_012917  1249063  1249620  +  558  adenine phosphoribosyltransferase  YP_003016660  decreased coverage  0.00248791  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1077  CDS  NC_012917  1251793  1252122  +  330  hypothetical protein  YP_003016662  decreased coverage  0.00394287  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1078  CDS  NC_012917  1252122  1252727  +  606  recombination protein RecR  YP_003016663  decreased coverage  0.00501486  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1371  CDS  NC_012917  1599259  1600203  +  945  Pectate lyase/Amb allergen  YP_003016953  decreased coverage  0.00120054  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1420  CDS  NC_012917  1662548  1664050  +  1503  proline/glycine betaine transporter  YP_003017002  decreased coverage  0.00160587  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1458  CDS  NC_012917  1707493  1708692  -  1200  drug resistance transporter, Bcr/CflA subfamily  YP_003017040  decreased coverage  0.00531988  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1734  CDS  NC_012917  2004865  2005542  +  678  cytidylate kinase  YP_003017311  decreased coverage  0.000603603  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1783  CDS  NC_012917  2059792  2060982  -  1191  aromatic amino acid aminotransferase  YP_003017360  decreased coverage  0.00163536  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1784  CDS  NC_012917  2061300  2062421  -  1122  porin Gram-negative type  YP_003017361  decreased coverage  0.00154811  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1785  CDS  NC_012917  2062717  2064117  -  1401  asparaginyl-tRNA synthetase  YP_003017362  decreased coverage  0.00203512  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1787  CDS  NC_012917  2065738  2068353  +  2616  aminopeptidase N  YP_003017364  decreased coverage  0.00859776  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1797  CDS  NC_012917  2080246  2081805  +  1560  methyl-accepting chemotaxis sensory transducer with Cache sensor  YP_003017374  decreased coverage  0.00249048  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1798  CDS  NC_012917  2082457  2083194  +  738  putative hydrolase  YP_003017375  decreased coverage  0.00489097  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1909  CDS  NC_012917  2203526  2204287  -  762  2-deoxy-D-gluconate 3-dehydrogenase  YP_003017486  decreased coverage  0.00371976  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_1910  CDS  NC_012917  2204369  2205205  -  837  5-keto-4-deoxyuronate isomerase  YP_003017487  decreased coverage  0.000905199  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_1965  CDS  NC_012917  2258158  2259153  -  996  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_003017542  decreased coverage  0.00751715  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2015  CDS  NC_012917  2311047  2313647  +  2601  DNA topoisomerase I  YP_003017592  decreased coverage  0.00844458  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2059  CDS  NC_012917  2363934  2365421  -  1488  Pyridoxal-dependent decarboxylase  YP_003017636  decreased coverage  0.00190827  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2060  CDS  NC_012917  2365440  2366822  -  1383  diaminobutyrate--2-oxoglutarate aminotransferase  YP_003017637  decreased coverage  0.00222981  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2061  CDS  NC_012917  2367221  2368516  -  1296  hypothetical protein  YP_003017638  decreased coverage  0.00233563  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2062  CDS  NC_012917  2368522  2368809  -  288  hypothetical protein  YP_003017639  decreased coverage  0.000656524  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2275  CDS  NC_012917  2615672  2616409  +  738  DNA-binding transcriptional regulator RstA  YP_003017849  decreased coverage  0.00968308  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2310  CDS  NC_012917  2651911  2652723  +  813  hypothetical protein  YP_003017880  decreased coverage  0.000437111  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2366  CDS  NC_012917  2722776  2723819  +  1044  Alcohol dehydrogenase GroES domain protein  YP_003017933  decreased coverage  0.0010665  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2382  CDS  NC_012917  2741165  2741602  -  438  transcriptional regulator SlyA  YP_003017949  decreased coverage  0.00066282  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2383  CDS  NC_012917  2741830  2742069  -  240  hypothetical protein  YP_003017950  decreased coverage  0.000497214  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2495  CDS  NC_012917  2862461  2863894  -  1434  PTS system glucose-specific transporter subunits IIBC  YP_003018062  decreased coverage  0.00256053  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2614  CDS  NC_012917  2981041  2981619  -  579  transcriptional activator FlhC  YP_003018180  decreased coverage  0.00253226  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2632  CDS  NC_012917  2994336  2994536  +  201  hypothetical protein  YP_003018198  decreased coverage  0.00517837  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2633  CDS  NC_012917  2994542  2994904  +  363  hypothetical protein  YP_003018199  decreased coverage  0.00725856  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2645  CDS  NC_012917  3006003  3006509  +  507  head completion protein  YP_003018211  decreased coverage  0.00983423  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2646  CDS  NC_012917  3006509  3006712  +  204  tail X family protein  YP_003018212  decreased coverage  0.00667297  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2647  CDS  NC_012917  3006703  3007005  +  303  phage-holin analog protein  YP_003018213  decreased coverage  0.00754716  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2649  CDS  NC_012917  3007453  3007878  +  426  hypothetical protein  YP_003018215  decreased coverage  0.00277725  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2669  CDS  NC_012917  3025559  3026215  -  657  response regulator  YP_003018235  decreased coverage  0.000700042  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_2961  CDS  NC_012917  3340971  3342188  +  1218  Arabinogalactan endo-1,4-beta-galactosidase  YP_003018520  decreased coverage  0.00892323  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3084  CDS  NC_012917  3492263  3493678  -  1416  glutamyl-tRNA synthetase  YP_003018643  decreased coverage  0.00745356  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3341  CDS  NC_012917  3769909  3770472  -  564  D,D-heptose 1,7-bisphosphate phosphatase  YP_003018893  decreased coverage  0.000466093  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3343  CDS  NC_012917  3771678  3772331  +  654  DL-methionine transporter permease subunit  YP_003018895  decreased coverage  0.000540247  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3344  CDS  NC_012917  3772395  3773210  +  816  DL-methionine transporter substrate-binding subunit  YP_003018896  decreased coverage  0.00065013  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3345  CDS  NC_012917  3773329  3773739  +  411  outer membrane lipoprotein  YP_003018897  decreased coverage  0.00047922  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3429  CDS  NC_012917  3877076  3877210  +  135  hypothetical protein  YP_003018981  decreased coverage  0.000390915  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3430  CDS  NC_012917  3877448  3878161  +  714  Opacity-associated protein A  YP_003018982  decreased coverage  0.000719849  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3450  CDS  NC_012917  3897310  3898023  +  714  alanine racemase domain protein  YP_003019002  decreased coverage  0.000700042  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3451  CDS  NC_012917  3898114  3898935  +  822  pyrroline-5-carboxylate reductase  YP_003019003  decreased coverage  0.00381464  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3708  CDS  NC_012917  4187463  4187975  +  513  hypothetical protein  YP_003019259  decreased coverage  0.000576402  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3721  CDS  NC_012917  4199890  4200189  -  300  RNA-binding protein Hfq  YP_003019272  decreased coverage  0.000253579  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3784  CDS  NC_012917  4285399  4286226  -  828  shikimate 5-dehydrogenase  YP_003019335  decreased coverage  0.000719849  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3785  CDS  NC_012917  4286246  4286815  -  570  SUA5/yciO/yrdC domain protein  YP_003019336  decreased coverage  0.000349894  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3786  CDS  NC_012917  4286808  4287365  -  558  DNA topoisomerase type IA zn finger domain protein  YP_003019337  decreased coverage  0.000331014  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3883  CDS  NC_012917  4369330  4369851  -  522  shikimate kinase I  YP_003019434  decreased coverage  0.000719849  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_3958  CDS  NC_012917  4467343  4468692  +  1350  sn-glycerol-3-phosphate transporter  YP_003019509  decreased coverage  0.00220837  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_4040  CDS  NC_012917  4569032  4569571  -  540  protoporphyrinogen oxidase  YP_003019591  decreased coverage  0.00450028  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_4078  CDS  NC_012917  4613820  4614299  -  480  type VI secretion system effector, Hcp1 family  YP_003019629  decreased coverage  0.00339373  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_4105  CDS  NC_012917  4638315  4638956  -  642  orotate phosphoribosyltransferase  YP_003019656  decreased coverage  0.00891654  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_4250  CDS  NC_012917  4811143  4811526  +  384  F0F1 ATP synthase subunit I  YP_003019800  decreased coverage  0.000394682  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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PC1_R0043  tRNA  NC_012917  2082090  2082179  -  90  tRNA-Ser    decreased coverage  0.00175988  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
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