75 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Lreu_0097  CDS  NC_009513  121729  123036  +  1308  seryl-tRNA synthetase  YP_001270706  decreased coverage  0.00000000017376  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0098  CDS  NC_009513  123305  124768  +  1464  polar amino acid ABC transporter, inner membrane subunit  YP_001270707  decreased coverage  0.000000000321849  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0116  CDS  NC_009513  142359  143501  +  1143  inosine-5'-monophosphate dehydrogenase  YP_001270725  decreased coverage  0.0000000000587091  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0172  CDS  NC_009513  204267  205220  +  954  aldo/keto reductase  YP_001270779  decreased coverage  0.00000000355208  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0220  CDS  NC_009513  254821  256188  +  1368  bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase  YP_001270827  decreased coverage  0.00000103036  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0221  CDS  NC_009513  256263  257252  +  990  ribose-phosphate pyrophosphokinase  YP_001270828  decreased coverage  0.000000000342806  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0230  CDS  NC_009513  264445  266049  +  1605  CTP synthetase  YP_001270837  decreased coverage  0.00000000181921  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0246  CDS  NC_009513  282268  283209  +  942  glutaminase  YP_001270853  decreased coverage  0.0000000116675  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0247  CDS  NC_009513  283355  283813  -  459  transposase IS200-family protein  YP_001270854  decreased coverage  0.000000000000837445  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0270  CDS  NC_009513  308433  309434  +  1002  nifR3 family TIM-barrel protein  YP_001270877  decreased coverage  0.0000000000135334  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0325  CDS  NC_009513  372252  372764  +  513  tRNA-adenosine deaminase  YP_001270932  decreased coverage  0.00296157  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0376  CDS  NC_009513  424915  425847  +  933  thioredoxin reductase  YP_001270982  decreased coverage  0.0000000265637  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0404  CDS  NC_009513  456412  457335  +  924  ribokinase  YP_001271010  decreased coverage  0.00000000422627  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0447  CDS  NC_009513  500206  501627  +  1422  amino acid permease-associated region  YP_001271052  decreased coverage  0.0000000329261  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0459  CDS  NC_009513  514460  515233  +  774  YibE/F family protein  YP_001271064  decreased coverage  0.0000000000110124  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0460  CDS  NC_009513  515393  516664  +  1272  uracil-xanthine permease  YP_001271065  decreased coverage  0.000000000162343  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0478  CDS  NC_009513  531685  532530  +  846  helix-turn-helix domain-containing protein  YP_001271083  decreased coverage  0.000000000308908  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0479  CDS  NC_009513  532927  534342  +  1416  sugar transporter  YP_001271084  decreased coverage  0.00000000749242  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0504  CDS  NC_009513  559767  562421  +  2655  valyl-tRNA synthetase  YP_001271109  decreased coverage  0.000000238585  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0572  CDS  NC_009513  636671  637324  +  654  RelA/SpoT domain-containing protein  YP_001271177  decreased coverage  0.0000000000868379  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0573  CDS  NC_009513  637328  638140  +  813  inorganic polyphosphate/ATP-NAD kinase  YP_001271178  decreased coverage  0.00000000182621  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0593  CDS  NC_009513  663203  664450  +  1248  cell division protein FtsZ  YP_001271197  decreased coverage  0.00000000134247  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0695  CDS  NC_009513  763435  763908  +  474  hypothetical protein  YP_001271297  decreased coverage  0.0000000000302569  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0696  CDS  NC_009513  763929  765116  +  1188  NusA antitermination factor  YP_001271298  decreased coverage  0.00000000696258  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0707  CDS  NC_009513  774668  775819  +  1152  chaperone protein DnaJ  YP_001271309  decreased coverage  0.000000115136  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0730  CDS  NC_009513  799117  800094  +  978  choloylglycine hydrolase  YP_001271331  decreased coverage  0.0000000000286672  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0762  CDS  NC_009513  834474  835160  +  687  cytidylate kinase  YP_001271363  decreased coverage  0.00000000000614962  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0793  CDS  NC_009513  865183  866712  -  1530  carbohydrate kinase, FGGY  YP_001271393  decreased coverage  0.0018017  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0803  CDS  NC_009513  873859  874632  +  774  prophage antirepressor  YP_001271403  decreased coverage  0.00000000145423  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0897  CDS  NC_009513  952334  953224  +  891  helix-turn-helix domain-containing protein  YP_001271497  decreased coverage  0.0000000354473  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0938  CDS  NC_009513  996296  996820  +  525  GCN5-related N-acetyltransferase  YP_001271537  decreased coverage  0.0000000000016136  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0947  CDS  NC_009513  1004122  1005510  -  1389  EmrB/QacA family drug resistance transporter  YP_001271546  decreased coverage  0.000000000410718  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0948  CDS  NC_009513  1005665  1006093  +  429  CopY family transcriptional regulator  YP_001271547  decreased coverage  0.0000000000394556  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0995  CDS  NC_009513  1048597  1049208  -  612  integrase catalytic subunit  YP_001271593  decreased coverage  0.000000156889  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1040  CDS  NC_009513  1101444  1101701  -  258  hypothetical protein  YP_001271637  decreased coverage  0.0000000000542415  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1041  CDS  NC_009513  1101780  1103183  -  1404  amino acid permease-associated region  YP_001271638  decreased coverage  0.000000000184403  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1062  CDS  NC_009513  1125301  1125876  +  576  ECF subfamily RNA polymerase sigma-24 factor  YP_001271656  decreased coverage  0.00000000000136578  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1063  CDS  NC_009513  1125886  1126122  +  237  hypothetical protein  YP_001271657  decreased coverage  0.000000000000223137  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1064  CDS  NC_009513  1126164  1126667  -  504  hypothetical protein  YP_001271658  decreased coverage  0.00000000000112228  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1066  CDS  NC_009513  1128360  1128545  -  186  4-oxalocrotonate tautomerase  YP_001271660  decreased coverage  0.000000000000129971  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1148  CDS  NC_009513  1200338  1201468  +  1131  phage integrase family protein  YP_001271742  decreased coverage  0.000000000721683  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1149  CDS  NC_009513  1201582  1201968  -  387  50S ribosomal protein L19  YP_001271743  decreased coverage  0.00000000000797714  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1154  CDS  NC_009513  1205097  1205372  -  276  30S ribosomal protein S16  YP_001271748  decreased coverage  0.00000000000677791  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1155  CDS  NC_009513  1205471  1206916  -  1446  signal recognition particle subunit FFH/SRP54 (srp54)  YP_001271749  decreased coverage  0.00000000491114  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1192  CDS  NC_009513  1242685  1242993  -  309  50S ribosomal protein L21  YP_001271786  decreased coverage  0.00000000108547  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1261  CDS  NC_009513  1309351  1310553  -  1203  ABC transporter EcsB  YP_001271855  decreased coverage  0.0000000013948  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1285  CDS  NC_009513  1331315  1332238  -  924  ribokinase  YP_001271879  decreased coverage  0.0000000000150833  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1287  CDS  NC_009513  1333393  1334001  -  609  hypothetical protein  YP_001271881  decreased coverage  0.00000000000296105  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1295  CDS  NC_009513  1341066  1343486  -  2421  leucyl-tRNA synthetase  YP_001271889  decreased coverage  0.00000279205  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1320  CDS  NC_009513  1375411  1375659  -  249  hypothetical protein  YP_001271914  decreased coverage  0.0000000000107414  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1321  CDS  NC_009513  1375717  1376730  -  1014  hypothetical protein  YP_001271915  decreased coverage  0.0000000000273017  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1322  CDS  NC_009513  1376730  1377758  -  1029  glycosyl transferase, group 1  YP_001271916  decreased coverage  0.000000000580469  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1366  CDS  NC_009513  1425439  1425897  -  459  transposase IS200-family protein  YP_001271952  decreased coverage  0.000626279  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1367  CDS  NC_009513  1426106  1427530  -  1425  mannosyl-glycoprotein endo-beta-N-acetylglucosamidase  YP_001271953  decreased coverage  0.000955772  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1377  CDS  NC_009513  1437283  1438050  -  768  hypothetical protein  YP_001271963  decreased coverage  0.00110436  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1443  CDS  NC_009513  1502482  1503597  -  1116  CamS sex pheromone cAM373 family protein  YP_001272026  decreased coverage  0.0000855314  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1496  CDS  NC_009513  1548840  1549868  -  1029  alcohol dehydrogenase  YP_001272079  decreased coverage  0.0000000000183073  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1497    NC_009513  1550157  1551084  +  928      decreased coverage  0.0000000000125201  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1554  CDS  NC_009513  1612282  1613214  +  933  ferrochelatase  YP_001272134  decreased coverage  0.0000841377  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1555  CDS  NC_009513  1613217  1614521  +  1305  Mn2+/Fe2+ transporter  YP_001272135  decreased coverage  0.000268932  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1582  CDS  NC_009513  1638830  1639939  -  1110  membrane protein putative toxin regulator-like protein  YP_001272161  decreased coverage  0.000000959585  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1602  CDS  NC_009513  1656024  1657091  -  1068  peptidoglycan-binding LysM  YP_001272179  decreased coverage  0.000032696  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1692  CDS  NC_009513  1755384  1756388  +  1005  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding  YP_001272268  decreased coverage  0.000779216  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1755  CDS  NC_009513  1808041  1809159  +  1119  hypothetical protein  YP_001272331  decreased coverage  0.00000000122074  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1791  CDS  NC_009513  1842746  1843573  +  828  homoserine O-succinyltransferase  YP_001272367  decreased coverage  0.0000000000111254  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1818  CDS  NC_009513  1871752  1872651  +  900  inner-membrane translocator  YP_001272394  decreased coverage  0.00000219565  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1819  CDS  NC_009513  1872644  1873408  +  765  ABC transporter related  YP_001272395  decreased coverage  0.0000182766  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1861  CDS  NC_009513  1919211  1920803  +  1593  Mn2+/Fe2+ transporter  YP_001272436  decreased coverage  0.0000364072  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1885  CDS  NC_009513  1944940  1945950  +  1011  asparagine synthetase AsnA  YP_001272459  decreased coverage  0.0000000000727816  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1941  CDS  NC_009513  1997177  1997944  -  768  single-stranded nucleic acid binding R3H domain-containing protein  YP_001272510  decreased coverage  0.0000134575  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_R0057  tRNA  NC_009513  1036507  1036580  -  74  tRNA-Pro    decreased coverage  0.0000000000568305  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_R0058  tRNA  NC_009513  1036584  1036672  -  89  tRNA-Leu    decreased coverage  0.000000000059003  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_R0083  tRNA  NC_009513  1551234  1551307  -  74  tRNA-Pro    decreased coverage  0.00000000000012865  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_R0084  tRNA  NC_009513  1551350  1551426  -  77  tRNA-Arg    decreased coverage  0.000000000000144766  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_R0085  tRNA  NC_009513  1551432  1551503  -  72  tRNA-Gly    decreased coverage  0.000000000000120136  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>