46 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Gbro_0101  CDS  NC_013441  115358  116155  -  798  protein of unknown function DUF1365  YP_003271345  decreased coverage  0.00443517  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_0228  CDS  NC_013441  248798  249739  -  942  ThiJ/PfpI domain protein  YP_003271467  decreased coverage  0.000506965  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_0503  CDS  NC_013441  554427  555539  +  1113  band 7 protein  YP_003271726  decreased coverage  0.00953758  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_0857  CDS  NC_013441  915615  916499  -  885  hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein  YP_003272063  decreased coverage  0.00184237  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_0858  CDS  NC_013441  916569  917174  +  606  regulatory protein TetR  YP_003272064  decreased coverage  0.00117784  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_0968  CDS  NC_013441  1029174  1030559  -  1386  DNA repair protein RadA  YP_003272172  decreased coverage  0.000135308  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1070  CDS  NC_013441  1128137  1129222  -  1086  Cellulase  YP_003272272  decreased coverage  0.00218389  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1117  CDS  NC_013441  1174108  1174380  +  273  Excalibur domain protein  YP_003272318  decreased coverage  0.000443461  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1118  CDS  NC_013441  1174492  1175322  +  831  hypothetical protein  YP_003272319  decreased coverage  0.00125104  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1362  CDS  NC_013441  1428506  1430134  +  1629  AMP-dependent synthetase and ligase  YP_003272539  decreased coverage  0.00632075  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1437  CDS  NC_013441  1503379  1503639  -  261  hypothetical protein  YP_003272612  decreased coverage  0.000252489  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1438  CDS  NC_013441  1503902  1504096  -  195  hypothetical protein  YP_003272613  decreased coverage  0.000235415  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1439  CDS  NC_013441  1504093  1504668  -  576  hypothetical protein  YP_003272614  decreased coverage  0.000545246  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1440  CDS  NC_013441  1504665  1504889  -  225  hypothetical protein  YP_003272615  decreased coverage  0.000316091  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1474  CDS  NC_013441  1534153  1536264  +  2112  sodium/hydrogen exchanger  YP_003272645  decreased coverage  0.00326365  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1475  CDS  NC_013441  1536266  1537078  +  813  tyrosine protein kinase  YP_003272646  decreased coverage  0.00640542  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_1482  CDS  NC_013441  1543980  1545191  +  1212  major facilitator superfamily MFS_1  YP_003272653  decreased coverage  0.000899768  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2017  CDS  NC_013441  2137970  2138515  -  546  Transcriptional regulator PadR-like protein  YP_003273163  decreased coverage  0.00625751  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2077  CDS  NC_013441  2207755  2209350  +  1596  signal recognition particle-docking protein FtsY  YP_003273222  decreased coverage  0.0051754  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2164  CDS  NC_013441  2296289  2298568  +  2280  polyribonucleotide nucleotidyltransferase  YP_003273306  decreased coverage  0.00328934  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2309  CDS  NC_013441  2450583  2451578  -  996  peptidyl-prolyl cis-trans isomerase cyclophilin type  YP_003273447  decreased coverage  0.00964121  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2351  CDS  NC_013441  2501763  2503145  +  1383  Fmu (Sun) domain protein  YP_003273486  decreased coverage  0.00754166  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2432  CDS  NC_013441  2599861  2600784  +  924  MscS Mechanosensitive ion channel  YP_003273566  decreased coverage  0.00547938  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2433  CDS  NC_013441  2601034  2602380  +  1347  peptidase M20  YP_003273567  decreased coverage  0.00897679  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2676  CDS  NC_013441  2864648  2865316  +  669  helicase-associated  YP_003273794  decreased coverage  0.00131855  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2754  CDS  NC_013441  2937978  2938628  -  651  hypothetical protein  YP_003273865  decreased coverage  0.00731615  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2777  CDS  NC_013441  2962991  2963626  -  636  CDP-alcohol phosphatidyltransferase  YP_003273888  decreased coverage  0.00563136  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2797  CDS  NC_013441  2984648  2986021  +  1374  Aldehyde Dehydrogenase  YP_003273906  decreased coverage  0.00921996  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2840  CDS  NC_013441  3034737  3035993  -  1257  arginine biosynthesis bifunctional protein ArgJ  YP_003273947  decreased coverage  0.00241996  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2841  CDS  NC_013441  3035990  3037042  -  1053  N-acetyl-gamma-glutamyl-phosphate reductase  YP_003273948  decreased coverage  0.00174896  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2855  CDS  NC_013441  3053063  3054202  +  1140  DoxX family protein  YP_003273961  decreased coverage  0.00921996  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_2881  CDS  NC_013441  3081027  3081689  -  663  response regulator receiver  YP_003273986  decreased coverage  0.00126066  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
-
 
Gbro_2882  CDS  NC_013441  3081676  3082917  -  1242  Histidine kinase  YP_003273987  decreased coverage  0.00350907  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
-
 
Gbro_3157  CDS  NC_013441  3383488  3384960  -  1473  CBS domain containing protein  YP_003274255  decreased coverage  0.00650526  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3159  CDS  NC_013441  3385526  3386557  -  1032  PhoH family protein  YP_003274257  decreased coverage  0.00307849  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3558  CDS  NC_013441  3780045  3781694  +  1650  chaperonin GroEL  YP_003274643  decreased coverage  0.00358723  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3585  CDS  NC_013441  3812105  3812593  -  489  NUDIX hydrolase  YP_003274668  decreased coverage  0.00428581  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3782  CDS  NC_013441  4066810  4067868  +  1059  ferredoxin  YP_003274854  decreased coverage  0.00690243  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3783  CDS  NC_013441  4067915  4068328  +  414  membrane protein-like protein  YP_003274855  decreased coverage  0.00217188  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3784  CDS  NC_013441  4068356  4069087  -  732  DNA alkylation repair enzyme  YP_003274856  decreased coverage  0.00121379  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3885  CDS  NC_013441  4175608  4177458  -  1851  hypothetical protein  YP_003274954  decreased coverage  0.00215112  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_3886  CDS  NC_013441  4177619  4179283  -  1665  hypothetical protein  YP_003274955  decreased coverage  0.00540166  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_4294  CDS  NC_013441  4599794  4600234  -  441  hypothetical protein  YP_003275332  decreased coverage  0.00886723  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_4350  CDS  NC_013441  4659647  4661386  +  1740  hypothetical protein  YP_003275385  decreased coverage  0.000306151  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_4455  CDS  NC_013441  4769505  4770395  +  891  MaoC domain protein dehydratase  YP_003275481  decreased coverage  0.00945579  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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Gbro_R0040  tRNA  NC_013441  2600859  2600944  -  86  tRNA-Leu    decreased coverage  0.00145069  n/a    Gordonia bronchialis DSM 43247  Bacteria 
 
 
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