85 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Aaci_0017  CDS  NC_013205  23592  24635  -  1044  hypothetical protein  YP_003183471  decreased coverage  0.0000960613  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0071  CDS  NC_013205  89934  90287  -  354  hypothetical protein  YP_003183524  decreased coverage  0.000941053  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0095  CDS  NC_013205  115223  116308  -  1086  hypothetical protein  YP_003183548  decreased coverage  0.000254666  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0174  CDS  NC_013205  192629  193507  +  879  4-diphosphocytidyl-2C-methyl-D-erythritolkinase  YP_003183626  decreased coverage  0.00151194  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0208  CDS  NC_013205  223430  223906  +  477  transcription elongation factor GreA  YP_003183660  decreased coverage  0.000000182043  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0402  CDS  NC_013205  459350  460309  +  960  protein of unknown function DUF6 transmembrane  YP_003183850  decreased coverage  0.000000893438  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0406  CDS  NC_013205  469731  470621  +  891  protein of unknown function DUF214  YP_003183854  decreased coverage  0.00446449  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0480  CDS  NC_013205  545615  547435  +  1821  type III restriction protein res subunit  YP_003183927  decreased coverage  0.00000916808  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0481  CDS  NC_013205  547541  547720  +  180  hypothetical protein  YP_003183928  decreased coverage  0.0000000916528  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0482  CDS  NC_013205  547717  548106  +  390  hypothetical protein  YP_003183929  decreased coverage  0.000000178511  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0758  CDS  NC_013205  815505  816074  +  570  Methyltransferase type 11  YP_003184191  decreased coverage  0.00287175  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0799  CDS  NC_013205  872120  873565  +  1446  2-methylcitrate dehydratase  YP_003184231  decreased coverage  0.0023431  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0823  CDS  NC_013205  893185  893838  -  654  FMN-binding negative transcriptional regulator  YP_003184254  decreased coverage  0.00293061  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0923  CDS  NC_013205  1002256  1003368  +  1113  Histidine--tRNA ligase  YP_003184352  decreased coverage  0.00438339  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1007  CDS  NC_013205  1077673  1078881  +  1209  DNA repair nucleotidyltransferase/DNA polymerase-like protein  YP_003184434  decreased coverage  0.00000370586  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1065  CDS  NC_013205  1133286  1133540  +  255  transcriptional regulator, XRE family  YP_003184491  decreased coverage  0.00304407  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1071  CDS  NC_013205  1135681  1135797  +  117  hypothetical protein  YP_003184497  decreased coverage  0.00220808  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1072  CDS  NC_013205  1135794  1136033  +  240  hypothetical protein  YP_003184498  decreased coverage  0.00264429  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1080  CDS  NC_013205  1143953  1145776  +  1824  type III restriction protein res subunit  YP_003184506  decreased coverage  0.0000886806  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1081  CDS  NC_013205  1145813  1146343  +  531  RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily  YP_003184507  decreased coverage  0.000001651  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1082  CDS  NC_013205  1146349  1146525  +  177  hypothetical protein  YP_003184508  decreased coverage  0.000000571629  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1083    NC_013205  1146561  1146707  +  147      decreased coverage  0.000000489555  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1084  CDS  NC_013205  1146712  1146906  +  195  hypothetical protein  YP_003184509  decreased coverage  0.00000050318  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1085  CDS  NC_013205  1146897  1147103  +  207  hypothetical protein  YP_003184510  decreased coverage  0.000000459218  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1086  CDS  NC_013205  1147210  1147515  +  306  hypothetical protein  YP_003184511  decreased coverage  0.000000655014  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1087  CDS  NC_013205  1147503  1148612  +  1110  DNA polymerase III, beta subunit  YP_003184512  decreased coverage  0.00000722327  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1088  CDS  NC_013205  1148646  1148864  +  219  hypothetical protein  YP_003184513  decreased coverage  0.000000556159  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1089  CDS  NC_013205  1148851  1149321  +  471  hypothetical protein  YP_003184514  decreased coverage  0.00000142718  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1123  CDS  NC_013205  1175679  1176059  -  381  transcriptional regulator, ArsR family  YP_003184547  decreased coverage  0.000000269044  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1124    NC_013205  1176219  1176551  -  333      decreased coverage  0.000000189143  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1200  CDS  NC_013205  1239568  1241250  +  1683  hypothetical protein  YP_003184620  decreased coverage  0.00000882868  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1201  CDS  NC_013205  1241315  1241785  +  471  AIG2 family protein  YP_003184621  decreased coverage  0.000000220206  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1215  CDS  NC_013205  1251893  1253233  +  1341  extracellular solute-binding protein family 1  YP_003184633  decreased coverage  0.0000064062  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1216  CDS  NC_013205  1253312  1254259  +  948  binding-protein-dependent transport systems inner membrane component  YP_003184634  decreased coverage  0.00000228392  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1217  CDS  NC_013205  1254252  1255079  +  828  binding-protein-dependent transport systems inner membrane component  YP_003184635  decreased coverage  0.00000178765  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1218  CDS  NC_013205  1255113  1258238  +  3126  glycoside hydrolase family 2 TIM barrel  YP_003184636  decreased coverage  0.000962199  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1233  CDS  NC_013205  1277754  1278881  +  1128  Haloacid dehalogenase domain protein hydrolase  YP_003184651  decreased coverage  0.00126511  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1246  CDS  NC_013205  1301770  1302162  +  393  Rhodanese domain protein  YP_003184664  decreased coverage  0.000851542  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1247  CDS  NC_013205  1302199  1302540  +  342  thioredoxin  YP_003184665  decreased coverage  0.000845354  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1255  CDS  NC_013205  1309237  1309533  -  297  protein of unknown function DUF1292  YP_003184673  decreased coverage  0.000140212  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1418  CDS  NC_013205  1467901  1468620  +  720  hypothetical protein  YP_003184833  decreased coverage  0.000757039  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1419  CDS  NC_013205  1469037  1469738  +  702  ribosomal protein S2  YP_003184834  decreased coverage  0.0000375862  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1430  CDS  NC_013205  1481597  1483426  -  1830  GTP-binding protein TypA  YP_003184845  decreased coverage  0.000885386  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1431  CDS  NC_013205  1483665  1484138  +  474  protein of unknown function DUF150  YP_003184846  decreased coverage  0.0000199616  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1460  CDS  NC_013205  1514480  1516135  +  1656  beta-lactamase domain protein  YP_003184874  decreased coverage  0.000017363  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1541    NC_013205  1597597  1599037  +  1441      decreased coverage  0.00000330462  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1542  CDS  NC_013205  1599223  1600167  +  945  hypothetical protein  YP_003184946  decreased coverage  0.000000812437  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1598  CDS  NC_013205  1665310  1665729  +  420  thioesterase superfamily protein  YP_003184999  decreased coverage  0.000000142015  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1666  CDS  NC_013205  1738144  1739175  -  1032  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_003185067  decreased coverage  0.00000106955  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1703  CDS  NC_013205  1769549  1770706  -  1158  RNA binding S1 domain protein  YP_003185104  decreased coverage  0.00000241805  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1714  CDS  NC_013205  1784800  1784967  -  168  hypothetical protein  YP_003185115  decreased coverage  0.0000000695208  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1715  CDS  NC_013205  1785059  1786447  -  1389  UvrD/REP helicase  YP_003185116  decreased coverage  0.00000356586  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1832  CDS  NC_013205  1880251  1880787  -  537  hypothetical protein  YP_003185233  decreased coverage  0.00111515  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1846  CDS  NC_013205  1895856  1897163  -  1308  trigger factor  YP_003185247  decreased coverage  0.00000327269  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1847  CDS  NC_013205  1897528  1898124  -  597  non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family  YP_003185248  decreased coverage  0.000000301722  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2033  CDS  NC_013205  2078744  2079142  -  399  arsenate reductase (thioredoxin)  YP_003185434  decreased coverage  0.00780291  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2052  CDS  NC_013205  2101681  2103237  -  1557  Propionyl-CoA carboxylase  YP_003185453  decreased coverage  0.00336851  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2172  CDS  NC_013205  2231831  2232295  -  465  translation initiation factor IF-3  YP_003185570  decreased coverage  0.00000864988  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2180  CDS  NC_013205  2242895  2244220  -  1326  xylose isomerase  YP_003185578  decreased coverage  0.000174675  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2197  CDS  NC_013205  2259731  2259931  +  201  cold-shock DNA-binding domain protein  YP_003185595  decreased coverage  0.000000106738  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2210  CDS  NC_013205  2270794  2271276  +  483  hypothetical protein  YP_003185608  decreased coverage  0.00461361  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2212  CDS  NC_013205  2271995  2272699  -  705  Rhomboid family protein  YP_003185610  decreased coverage  0.00605445  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2378  CDS  NC_013205  2441193  2441981  -  789  transcriptional repressor CodY  YP_003185774  decreased coverage  0.000000594267  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2544  CDS  NC_013205  2616959  2618176  -  1218  hypothetical protein  YP_003185938  decreased coverage  0.0000182738  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2645  CDS  NC_013205  2721625  2722410  +  786  protein of unknown function DUF81  YP_003186038  decreased coverage  0.000890995  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2662  CDS  NC_013205  2742192  2742566  -  375  protein of unknown function DUF322  YP_003186055  decreased coverage  0.00000716199  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2684  CDS  NC_013205  2763481  2764107  -  627  30S ribosomal protein S4  YP_003186077  decreased coverage  0.000106865  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2685  CDS  NC_013205  2764170  2764586  -  417  30S ribosomal protein S11  YP_003186078  decreased coverage  0.000312441  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2686  CDS  NC_013205  2764605  2764973  -  369  30S ribosomal protein S13  YP_003186079  decreased coverage  0.000961805  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2711  CDS  NC_013205  2776161  2776796  -  636  50S ribosomal protein L3  YP_003186104  decreased coverage  0.00000399657  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2712  CDS  NC_013205  2776851  2777159  -  309  ribosomal protein S10  YP_003186105  decreased coverage  0.00000160608  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2713  CDS  NC_013205  2777437  2778624  -  1188  translation elongation factor Tu  YP_003186106  decreased coverage  0.0000152961  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2746  CDS  NC_013205  2811452  2811991  -  540  CDP-diacylglycerol/glycerol-3-phosphate3- phospha tidyltransferase  YP_003186139  decreased coverage  0.00000168146  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2782  CDS  NC_013205  2841229  2842533  -  1305  transcription termination factor Rho  YP_003186175  decreased coverage  0.00000423025  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2910  CDS  NC_013205  2983174  2983860  -  687  biotin/lipoyl attachment domain-containing protein  YP_003186303  decreased coverage  0.00000263786  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2911  CDS  NC_013205  2984095  2984742  +  648  heat shock protein DnaJ domain protein  YP_003186304  decreased coverage  0.00000293792  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_3000  CDS  NC_013206  43775  44206  -  432  hypothetical protein  YP_003186392  decreased coverage  0.000000181354  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0046  tRNA  NC_013205  1279162  1279253  +  92  tRNA-Ser    decreased coverage  0.00112591  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0047  tRNA  NC_013205  1279264  1279340  +  77  tRNA-Met    decreased coverage  0.00104453  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0048  tRNA  NC_013205  1279344  1279418  +  75  tRNA-Thr    decreased coverage  0.00108032  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0061  tRNA  NC_013205  1897306  1897381  -  76  tRNA-Arg    decreased coverage  0.0000000631723  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0062  tRNA  NC_013205  1897386  1897459  -  74  tRNA-Gly    decreased coverage  0.0000000596481  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0071  tRNA  NC_013205  2270371  2270445  -  75  tRNA-Gly    decreased coverage  0.00174778  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0072  tRNA  NC_013205  2270451  2270526  -  76  tRNA-Phe    decreased coverage  0.00159323  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0073  tRNA  NC_013205  2270540  2270614  -  75  tRNA-Ala    decreased coverage  0.00171316  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>