36 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Tpau_0308  CDS  NC_014158  313749  314651  +  903  hypothetical protein  YP_003645293  decreased coverage  0.0029432  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_0684  CDS  NC_014158  702450  703970  -  1521  Carboxylesterase  YP_003645660  decreased coverage  0.00959142  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_0959  CDS  NC_014158  983295  984065  -  771  ABC-2 type transporter  YP_003645931  decreased coverage  0.00197586  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_0997  CDS  NC_014158  1019286  1020374  +  1089  galactokinase  YP_003645969  decreased coverage  0.00864415  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_0998  CDS  NC_014158  1020511  1023549  +  3039  Beta-galactosidase  YP_003645970  decreased coverage  0.00145387  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1118  CDS  NC_014158  1143482  1145092  +  1611  DEAD/DEAH box helicase domain protein  YP_003646089  decreased coverage  0.00868437  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1395  CDS  NC_014158  1464854  1465336  +  483  hypothetical protein  YP_003646362  decreased coverage  0.00858881  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1422  CDS  NC_014158  1489530  1490237  +  708  hypothetical protein  YP_003646389  decreased coverage  0.00171522  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1423  CDS  NC_014158  1490234  1491763  -  1530  integrase family protein  YP_003646390  decreased coverage  0.00313784  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1424  CDS  NC_014158  1491765  1492412  -  648  Resolvase domain protein  YP_003646391  decreased coverage  0.00141617  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1572  CDS  NC_014158  1638708  1639517  +  810  hypothetical protein  YP_003646532  decreased coverage  0.00182797  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1610  CDS  NC_014158  1684965  1687418  +  2454  UTP-GlnB uridylyltransferase, GlnD  YP_003646570  decreased coverage  0.00765981  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1692  CDS  NC_014158  1762241  1763101  +  861  methionine aminopeptidase, type I  YP_003646649  decreased coverage  0.00462281  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_1943  CDS  NC_014158  2028813  2029937  +  1125  protein-export membrane protein SecF  YP_003646895  decreased coverage  0.00503357  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2089  CDS  NC_014158  2178788  2179555  +  768  hypothetical protein  YP_003647040  decreased coverage  0.0056958  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2093  CDS  NC_014158  2181897  2182496  -  600  hypothetical protein  YP_003647044  decreased coverage  0.0050672  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2181  CDS  NC_014158  2275132  2275401  +  270  hypothetical protein  YP_003647130  decreased coverage  0.0071007  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2182  CDS  NC_014158  2275379  2275750  -  372  transcriptional regulator, MerR family  YP_003647131  decreased coverage  0.0034846  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2259  CDS  NC_014158  2348530  2349909  -  1380  amine oxidase  YP_003647207  decreased coverage  0.00770255  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2537  CDS  NC_014158  2630805  2631050  -  246  preprotein translocase, SecG subunit  YP_003647479  decreased coverage  0.000769427  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2538  CDS  NC_014158  2631111  2631893  -  783  triosephosphate isomerase  YP_003647480  decreased coverage  0.00272657  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2599  CDS  NC_014158  2698239  2698922  -  684  lipolytic protein G-D-S-L family  YP_003647541  decreased coverage  0.000683543  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2835  CDS  NC_014158  2937586  2937777  +  192  ribosomal protein L28  YP_003647772  decreased coverage  0.00627595  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_2836  CDS  NC_014158  2937856  2938479  +  624  transcriptional regulator, TetR family  YP_003647773  decreased coverage  0.00562159  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3052  CDS  NC_014158  3161566  3162777  -  1212  HNH endonuclease  YP_003647984  decreased coverage  0.00448111  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3073  CDS  NC_014158  3188363  3189964  +  1602  ABC transporter permease protein  YP_003648004  decreased coverage  0.00508741  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3087  CDS  NC_014158  3200623  3201315  -  693  ThiJ/PfpI domain protein  YP_003648018  decreased coverage  0.00619766  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3088  CDS  NC_014158  3201407  3201841  +  435  transcriptional regulator, MarR family  YP_003648019  decreased coverage  0.00891754  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3122  CDS  NC_014158  3231240  3231896  +  657  hypothetical protein  YP_003648048  decreased coverage  0.000156322  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3123  CDS  NC_014158  3231977  3232573  +  597  MCP methyltransferase, CheR-type  YP_003648049  decreased coverage  0.000131582  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3459  CDS  NC_014158  3540686  3542059  +  1374  Integrase catalytic region  YP_003648380  decreased coverage  0.00200761  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_3970  CDS  NC_014158  4088224  4089444  -  1221  putative transcriptional regulator, PucR family  YP_003648880  decreased coverage  0.00695384  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_4242  CDS  NC_014158  4378814  4379242  -  429  ribonuclease P protein component  YP_003649149  decreased coverage  0.0023987  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_4307  CDS  NC_014159  62645  63070  +  426  transcriptional regulator, MerR family  YP_003649211  decreased coverage  0.00729055  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_R0028  rRNA  NC_014158  2479948  2483034  -  3087  23S ribosomal RNA    decreased coverage  0.00806626  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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Tpau_R0029  rRNA  NC_014158  2483437  2484943  -  1507  16S ribosomal RNA    decreased coverage  0.000204422  n/a    Tsukamurella paurometabola DSM 20162  Bacteria 
 
 
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